Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0437 ATGGCCGTCGCATTCCATGACGTTAAGTCGGCAGCTGGTCTGAAGAAACTCGACGATTATCTCCTCACTCGTAGCTACATTACCGGGTATCAAGCTTCAAAGGATGATATTACTGTCTACGAAGCTCTCGACAAACCTGTATCTAGCGAATATGTTAATGTTTCTAGGTGGACCAATCACATCGAAGCACTATTGAGAATTTCTGCTGAATTTGGAGAGGGATCTGGTATTAAGATCGGTGCTGAAGCTATTGCTACCCCGCCCGCGGCTGATTCCAAGGCTTCTGCTGCTGATGACGACGATGACGACGATGATATGGATTTGTTTGGTGAAGAGACTGAGGAGGAAAAGAAGGCAGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTGCAAAGAAGAAAGAATCTGGCAAGTCATCAGTTTTGATGGATGTGAAGCCGTGGGATGATGAGACAGACATGAAGAAACTCGAAGAGGCTTTTCCGTAG 489 46.83 MAVAFHDVKSAAGLKKLDDYLLTRSYITGYQASKDDITVYEALDKPVSSEYVNVSRWTNHIEALLRISAEFGEGSGIKIGAEAIATPPAADSKASAADDDDDDDDMDLFGEETEEEKKAAEERAASIKASAKKKESGKSSVLMDVKPWDDETDMKKLEEAFP 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2791349 2792669 + evm.model.ptg000005l.1080 HCH3g0437 541165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0437 162 Coils Coil 110 130 - -
HCH3g0437 162 MobiDBLite consensus disorder prediction 112 162 - -
HCH3g0437 162 Pfam EF-1 guanine nucleotide exchange domain 140 160 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH3g0437 162 FunFam Elongation factor 1-delta 1 3 78 - -
HCH3g0437 162 SUPERFAMILY GST C-terminal domain-like 9 67 IPR036282 -
HCH3g0437 162 Gene3D - 3 73 - -
HCH3g0437 162 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 160 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
HCH3g0437 162 Gene3D - 131 161 IPR014717 -
HCH3g0437 162 MobiDBLite consensus disorder prediction 82 162 - -
HCH3g0437 162 MobiDBLite consensus disorder prediction 96 111 - -
HCH3g0437 162 SUPERFAMILY eEF-1beta-like 135 160 IPR036219 -
HCH3g0437 162 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 102 110 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0437 HCH-Chr3:2791349 HCH3g0440 HCH-Chr3:2816129 1.80E-50 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0437 K03232 - csv:101215827 211.075