Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0440 | ATGGCGGTCGCATTCCACGACGTAAAATCGGCAGCCGGTTTGAAGAAACTCGACGATTATCTACTTACTCGTAGCTATATCACCGGGTATGAAGCTTCAAAGGATGATAGAACCGTTTATGAAGCTCTCGCTAAACCTGTATCTAGCGAATATGTTAATATTTCTAGGTGGAGTAATCACATTGAAGCACTTTTGAGAATTTCTGGTGTTTTTGGAGAGGGTTCTGGCGTTAAGATTGGTGGATCGGCTGAAGCTATTGCAACACCGCCCGCGGCTGACTCAAAGGCTTCTGCTGCCGAAGATGACGATGACGATGACGATATGGATTTGTTTGGTGATGAGACTGAAGAGGAAAAGAAGGCCACCGAGGAGCGTGCAGCTGCTGTGAAGGCTTCTATAAAGAAGAAGGAATCTGGCAAGTCGTCGGTTCTGATGGATATCAAGCCTTGGGATGATGAGACGGACATGAAGAAACTCGAAGAGGCGGTAAGAAGTGTTGAGATAGAAGGCTTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGATATGGTATAAAGAAATTGCAGATAATGCTCACAATTGTGGACGACTTAGTGTCCGTTGACGATCTTATTGAAGAACGTCTGACAGCCGAACCTATTAATGAGTATGTTCAGAGCTGTGATATTGTGGCCTTCAACAAAATCTATGATGGAATATCCTAA | 705 | 44.54 | MAVAFHDVKSAAGLKKLDDYLLTRSYITGYEASKDDRTVYEALAKPVSSEYVNISRWSNHIEALLRISGVFGEGSGVKIGGSAEAIATPPAADSKASAAEDDDDDDDMDLFGDETEEEKKATEERAAAVKASIKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEIEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDLIEERLTAEPINEYVQSCDIVAFNKIYDGIS | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2816129 | 2818210 | + | evm.model.ptg000005l.1077 | HCH3g0440 | 541168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0440 | 234 | SUPERFAMILY | eEF-1beta-like | 137 | 229 | IPR036219 | - | |
HCH3g0440 | 234 | MobiDBLite | consensus disorder prediction | 98 | 113 | - | - | |
HCH3g0440 | 234 | SMART | EF1_GNE_2 | 140 | 229 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH3g0440 | 234 | MobiDBLite | consensus disorder prediction | 88 | 123 | - | - | |
HCH3g0440 | 234 | FunFam | Elongation factor 1-delta 1 | 3 | 78 | - | - | |
HCH3g0440 | 234 | Gene3D | - | 133 | 229 | IPR014717 | - | |
HCH3g0440 | 234 | CDD | EF1B | 138 | 229 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH3g0440 | 234 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 104 | 112 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH3g0440 | 234 | FunFam | Elongation factor 1-beta 1 like | 134 | 229 | - | - | |
HCH3g0440 | 234 | SUPERFAMILY | GST C-terminal domain-like | 9 | 69 | IPR036282 | - | |
HCH3g0440 | 234 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 218 | 229 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH3g0440 | 234 | Pfam | EF-1 guanine nucleotide exchange domain | 142 | 229 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH3g0440 | 234 | Gene3D | - | 3 | 73 | - | - | |
HCH3g0440 | 234 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 229 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0437 | HCH-Chr3:2791349 | HCH3g0440 | HCH-Chr3:2816129 | 1.80E-50 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g0440 | K03232 | - | csv:101215827 | 323.168 |