Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0440 ATGGCGGTCGCATTCCACGACGTAAAATCGGCAGCCGGTTTGAAGAAACTCGACGATTATCTACTTACTCGTAGCTATATCACCGGGTATGAAGCTTCAAAGGATGATAGAACCGTTTATGAAGCTCTCGCTAAACCTGTATCTAGCGAATATGTTAATATTTCTAGGTGGAGTAATCACATTGAAGCACTTTTGAGAATTTCTGGTGTTTTTGGAGAGGGTTCTGGCGTTAAGATTGGTGGATCGGCTGAAGCTATTGCAACACCGCCCGCGGCTGACTCAAAGGCTTCTGCTGCCGAAGATGACGATGACGATGACGATATGGATTTGTTTGGTGATGAGACTGAAGAGGAAAAGAAGGCCACCGAGGAGCGTGCAGCTGCTGTGAAGGCTTCTATAAAGAAGAAGGAATCTGGCAAGTCGTCGGTTCTGATGGATATCAAGCCTTGGGATGATGAGACGGACATGAAGAAACTCGAAGAGGCGGTAAGAAGTGTTGAGATAGAAGGCTTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGATATGGTATAAAGAAATTGCAGATAATGCTCACAATTGTGGACGACTTAGTGTCCGTTGACGATCTTATTGAAGAACGTCTGACAGCCGAACCTATTAATGAGTATGTTCAGAGCTGTGATATTGTGGCCTTCAACAAAATCTATGATGGAATATCCTAA 705 44.54 MAVAFHDVKSAAGLKKLDDYLLTRSYITGYEASKDDRTVYEALAKPVSSEYVNISRWSNHIEALLRISGVFGEGSGVKIGGSAEAIATPPAADSKASAAEDDDDDDDMDLFGDETEEEKKATEERAAAVKASIKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEIEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDLIEERLTAEPINEYVQSCDIVAFNKIYDGIS 234
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2816129 2818210 + evm.model.ptg000005l.1077 HCH3g0440 541168
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0440 234 SUPERFAMILY eEF-1beta-like 137 229 IPR036219 -
HCH3g0440 234 MobiDBLite consensus disorder prediction 98 113 - -
HCH3g0440 234 SMART EF1_GNE_2 140 229 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH3g0440 234 MobiDBLite consensus disorder prediction 88 123 - -
HCH3g0440 234 FunFam Elongation factor 1-delta 1 3 78 - -
HCH3g0440 234 Gene3D - 133 229 IPR014717 -
HCH3g0440 234 CDD EF1B 138 229 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH3g0440 234 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 104 112 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH3g0440 234 FunFam Elongation factor 1-beta 1 like 134 229 - -
HCH3g0440 234 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
HCH3g0440 234 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 218 229 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH3g0440 234 Pfam EF-1 guanine nucleotide exchange domain 142 229 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH3g0440 234 Gene3D - 3 73 - -
HCH3g0440 234 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 229 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0437 HCH-Chr3:2791349 HCH3g0440 HCH-Chr3:2816129 1.80E-50 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0440 K03232 - csv:101215827 323.168