Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0443 ATGACAACAACAACCACTAGTATCGGCGGCGGTGGCGGCGGCGGCGGTGAAGATCGAGTTTTGGCTACAGCTCAGCAGATAGTCAATAGTCTGAATACTCCTAAAGAGGTTCGTGAAGATATGCTTTTAATCTTTTCTAGTTTTGATAATCGTCTCTCTAATATTACAAGTCTTGTTGACCCTGGGGATTCCAAGAGGGAAAAAGACCGTTTTGAAACGGCTGAGAAATTGATTCTTCGTTGGGATTCTAATGGTAATAGTAATAGTAATCATCATCATGGAGCTTCTAGAAACTCCCTTTCTTGGGAGGATTCACCTGACGAGGTGGCTGAGTATTTATCTGCGGTTGATGATATCATCATGTTGATGGATGATATGTCGATTCGGTCTGATTCCGTTGGGATCGTCGACCGTGCCGAGAACGCGATCCAGATCGCTATGTCGAAGCTTGAGGATGAGTTTCGACATGTTTTGATTCGTAGCACGGTTCCGTTTGATGCGGAGCGTCTTTACGGTTCAATTCGGAAGGTTTCGCTGTCTTTTGCTTCTCATGATAGTGAGATTTCTGATGAATTTGAGTCGTTTGGTGAAGTTGGTAGCGGTTCGGGGATTTTCCATGAGCGTGGTGTGAGTTTGGGAGATGATTTGCGGGTCGATTTGATCCATCCGGATGCTGTTGATGATTTGAAAGAGATTGCGGACCGGATGATACGGGCTGGATATGTGAAGGAGTGTGTCAATGTGTATACTAGTGTCCGACGGGATGCTTTGGCTGAGTGTTTGGTGGTACTTGGAGTTGAGAAGCTGAGTATTGAGGATGTTCAGAAAATTGAATGGAAAGTTTTGGATGAGAAGATGAAGAAATGGATTCAGGCTGTAAAGGTTTCTGCTCGGGTGCTTTTGACAGGCGAGAAGCGATTGTGTGACCTTATTTTTAGTGGTTCTGATGATTCTGAGGAAGTTTGCTTCAATGAGACTGCAAAGGGGTGTATCAGGCAGCTTTTGAATTTCGCAGAGGCTATTGCTATAGGGGAAAGATCCGTGGAGAAGCTGTTTCGTATTCTGGATATGTATGATGCTCTGGCTGATGCTTTCCCGAACTTGCAGGCTATGGTTACTGATGAATTCGTGATTGATGAGGCACAAGGAGTGCTTTCTGGATTGGGAGAGGCTGCTAAAGGCACGTTTAAGGAATTTGAGAATGCGGTTCGGAATGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCCCTTACTCGTTATGTTATGAATTATTTAAGGTTGCTTGCAGTTTACAGTAAGACTCTAGATATTCTTTTAGAAAGTGAGGACGAGGGATTGCATCATATACAAGATGATAATGGTGATCATTTACAGTTAGAAAACATGTCTCCTTTAGCATGTCATCTATATTTATTGATATCATCACTGGAATCCAATCTAGAGGGAAAATCCAAACTCTATAATGATGATTCTATACAATGTATTTTTCTCATGAATAATATACAATACATAGTGCAGAAAGTGAAAGATTCCGAGCTTAGCAAGCTTTTGGGTGACCGCTGGGTTCGCAAGCGGCGAGGCCAAGTTCGCATATATGCAACAAATTATCTTAGGGCTTCTTGGGGCAAAGTTTTATCTTATTTAAGGGATGAAGGTACTGGTGGGAGCTCCAGTAATGCTTTGAAGCTGGCTTTGAAGGACAAATTCAAAAATTTCAATTCTGGCATTGAGGAAATATATAGAATTCAGACAGCTTGGAAGGTTTCTGATTCTCAACTACGAGAAGAACTCCAAATATCGATATCTGCAAGAGTGATTCCTGCATATCGTGCCTTCTTGGGAAGGTTTGGTAGTCAGATAGAGAGTGGAAGACATGCCGGGAGGTATATAAAGTACTCATCTGATGACTTGGAGAACTATTTATCGGATCTGTTTGAAGGAACACCATGTGTTATGCACCACTTACGAAGAAAAAGTACATAA 1992 42.12 MTTTTTSIGGGGGGGGEDRVLATAQQIVNSLNTPKEVREDMLLIFSSFDNRLSNITSLVDPGDSKREKDRFETAEKLILRWDSNGNSNSNHHHGASRNSLSWEDSPDEVAEYLSAVDDIIMLMDDMSIRSDSVGIVDRAENAIQIAMSKLEDEFRHVLIRSTVPFDAERLYGSIRKVSLSFASHDSEISDEFESFGEVGSGSGIFHERGVSLGDDLRVDLIHPDAVDDLKEIADRMIRAGYVKECVNVYTSVRRDALAECLVVLGVEKLSIEDVQKIEWKVLDEKMKKWIQAVKVSARVLLTGEKRLCDLIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYDALADAFPNLQAMVTDEFVIDEAQGVLSGLGEAAKGTFKEFENAVRNETSKKTMLNAEIHPLTRYVMNYLRLLAVYSKTLDILLESEDEGLHHIQDDNGDHLQLENMSPLACHLYLLISSLESNLEGKSKLYNDDSIQCIFLMNNIQYIVQKVKDSELSKLLGDRWVRKRRGQVRIYATNYLRASWGKVLSYLRDEGTGGSSSNALKLALKDKFKNFNSGIEEIYRIQTAWKVSDSQLREELQISISARVIPAYRAFLGRFGSQIESGRHAGRYIKYSSDDLENYLSDLFEGTPCVMHHLRRKST 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2826887 2828878 - evm.model.ptg000005l.1074 HCH3g0443 541171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0443 663 Pfam Exo70 exocyst complex subunit C-terminal 287 646 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH3g0443 663 SUPERFAMILY Cullin repeat-like 75 649 IPR016159 -
HCH3g0443 663 FunFam Exocyst subunit Exo70 family protein 95 656 - -
HCH3g0443 663 MobiDBLite consensus disorder prediction 82 102 - -
HCH3g0443 663 Gene3D Exocyst complex component Exo70 90 656 - -
HCH3g0443 663 PANTHER EXOCYST COMPLEX PROTEIN EXO70 49 651 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH3g0443 663 Pfam Exocyst complex component Exo70 N-terminal 71 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0443 HCH-Chr3:2826887 HCH9g0296 HCH-Chr9:1835650 4.50E-116 dispersed
HCH10g1059 HCH-Chr10:36946672 HCH3g0443 HCH-Chr3:2826887 3.60E-92 transposed
HCH3g1483 HCH-Chr3:52868124 HCH3g0443 HCH-Chr3:2826887 7.90E-110 transposed
HCH5g1180 HCH-Chr5:40549821 HCH3g0443 HCH-Chr3:2826887 1.90E-90 transposed
HCH6g0062 HCH-Chr6:687870 HCH3g0443 HCH-Chr3:2826887 8.90E-122 transposed
HCH9g1220 HCH-Chr9:26260349 HCH3g0443 HCH-Chr3:2826887 1.40E-32 transposed
HCH3g0443 HCH-Chr3:2826887 HCH8g1477 HCH-Chr8:49150171 7.40E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0443 K07195 - csv:101212753 1030.39