Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0451 ATGGTAAACAACCAATCAATGGAAAACAATCAATTCCCACAAATCCAACACCCTCCCCCTCCCCCTCCACCTTCTTTCCATCACCCGCTCCAACAACAACAGCAGCAGCAACAACTGAATATGTTTTGGTCTATCCAACGTCAAGAAATCGAACAAGTTAATGATTTCAAAAACCACCAACTCCCTTTAGCCCGTATCAAAAAAATCATGAAAGCTGATGAAGATGTTCGTATGATCTCTGCGGAAGCACCCATTTTGTTCTCTAAAGCCTGTGAGCTTTTCATTCTTGAACTTACAATCAGGTCCTGGCTTCACGCTGAGGAGAATAAGAGAAGGACTTTGCAAAAGAATGATATTGCTGCTGCTATTACCAGGACTGATATCTTTGATTTTCTTGTTGATATTGTTCCTAGAGATGAGATCAAGGAGGAAGCTGCTGGATTGGGAGGAATTGTTGGTCCTACTGCTAGTGGGGTGCCGTATTATTATCCTCCTATGGGGCAACCTGCTGCTGGGATGATGATTGGGAGACCCGGGATCGATCCCGCTGCGGTTTACGGTCAGCCGCCGTCGCAAGCGTGGCAATCGGTTTGGCAATCCGGTGTGGAGGATGGATCTTATGGTAGTGGCGGTAGCAGTGGGCATGGCAATCTTGATGGCCATTAG 666 46.55 MVNNQSMENNQFPQIQHPPPPPPPSFHHPLQQQQQQQQLNMFWSIQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEAAGLGGIVGPTASGVPYYYPPMGQPAAGMMIGRPGIDPAAVYGQPPSQAWQSVWQSGVEDGSYGSGGSSGHGNLDGH 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2867793 2868458 + evm.model.ptg000005l.1066 HCH3g0451 541179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0451 221 Pfam Core histone H2A/H2B/H3/H4 31 123 IPR007125 GO:0003677(InterPro)
HCH3g0451 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 40 144 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH3g0451 221 SUPERFAMILY Histone-fold 21 132 IPR009072 GO:0046982(InterPro)
HCH3g0451 221 MobiDBLite consensus disorder prediction 14 28 - -
HCH3g0451 221 FunFam Nuclear transcription factor Y subunit gamma 27 138 - -
HCH3g0451 221 MobiDBLite consensus disorder prediction 201 221 - -
HCH3g0451 221 MobiDBLite consensus disorder prediction 1 29 - -
HCH3g0451 221 Gene3D Histone, subunit A 26 138 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0451 HCH-Chr3:2867793 HCH8g0128 HCH-Chr8:5282909 1.10E-50 dispersed
HCH4g1759 HCH-Chr4:30658108 HCH3g0451 HCH-Chr3:2867793 2.40E-52 transposed
HCH6g1213 HCH-Chr6:46570790 HCH3g0451 HCH-Chr3:2867793 9.00E-23 transposed
HCH3g0451 HCH-Chr3:2867793 HCH8g1484 HCH-Chr8:49186037 1.10E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT3G48590 87.9 4.3e-85 311.2
HCH3g0451 . 39 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.2 6.2e-84 307.4
HCH4g1759 . 81 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.0 1.1e-51 200.3
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.3 1.2e-50 196.8
HCH8g0128 . 16 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 7.0e-56 214.2
HCH4g1759 . 27 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 51.7 2.4e-48 189.1
HCH8g1484 . 5 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 5.2e-43 171.4
HCH3g0451 . 38 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 81.0 5.8e-42 167.9
HCH8g0128 . 16 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 1.5e-63 239.6
HCH4g1759 . 81 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 4.0e-53 204.9
HCH8g1484 . 34 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 65.6 1.1e-50 196.8
HCH3g0451 . 38 195 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.6 2.4e-50 195.7
HCH8g1484 . 34 189 CCAAT-HAP5 Transcription Factor Family AT5G50480 55.3 9.9e-38 153.7
HCH3g0451 . 38 194 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.1 2.2e-37 152.5
HCH3g0451 . 39 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.6 6.0e-77 284.3
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT5G63470 78.2 2.3e-76 282.3
HCH4g1759 . 81 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.5 2.6e-48 189.1
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.4 3.4e-48 188.7
HCH4g1759 . 50 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.1 2.7e-64 241.9
HCH3g0451 . 39 163 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.4e-49 193.0
HCH8g1484 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.9e-49 192.6
HCH8g0128 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.5 9.4e-49 190.3
HCH1g0595 . 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.9 4.1e-61 231.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33311 PF00808 CBFD_NFYB_HMF 2.80E-17 CL0012 HCH TF