Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0451 ATGGTAAACAACCAATCAATGGAAAACAATCAATTCCCACAAATCCAACACCCTCCCCCTCCCCCTCCACCTTCTTTCCATCACCCGCTCCAACAACAACAGCAGCAGCAACAACTGAATATGTTTTGGTCTATCCAACGTCAAGAAATCGAACAAGTTAATGATTTCAAAAACCACCAACTCCCTTTAGCCCGTATCAAAAAAATCATGAAAGCTGATGAAGATGTTCGTATGATCTCTGCGGAAGCACCCATTTTGTTCTCTAAAGCCTGTGAGCTTTTCATTCTTGAACTTACAATCAGGTCCTGGCTTCACGCTGAGGAGAATAAGAGAAGGACTTTGCAAAAGAATGATATTGCTGCTGCTATTACCAGGACTGATATCTTTGATTTTCTTGTTGATATTGTTCCTAGAGATGAGATCAAGGAGGAAGCTGCTGGATTGGGAGGAATTGTTGGTCCTACTGCTAGTGGGGTGCCGTATTATTATCCTCCTATGGGGCAACCTGCTGCTGGGATGATGATTGGGAGACCCGGGATCGATCCCGCTGCGGTTTACGGTCAGCCGCCGTCGCAAGCGTGGCAATCGGTTTGGCAATCCGGTGTGGAGGATGGATCTTATGGTAGTGGCGGTAGCAGTGGGCATGGCAATCTTGATGGCCATTAG 666 46.55 MVNNQSMENNQFPQIQHPPPPPPPSFHHPLQQQQQQQQLNMFWSIQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEAAGLGGIVGPTASGVPYYYPPMGQPAAGMMIGRPGIDPAAVYGQPPSQAWQSVWQSGVEDGSYGSGGSSGHGNLDGH 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2867793 2868458 + evm.model.ptg000005l.1066 HCH3g0451 541179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0451 221 Pfam Core histone H2A/H2B/H3/H4 31 123 IPR007125 GO:0003677(InterPro)
HCH3g0451 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 40 144 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH3g0451 221 SUPERFAMILY Histone-fold 21 132 IPR009072 GO:0046982(InterPro)
HCH3g0451 221 MobiDBLite consensus disorder prediction 14 28 - -
HCH3g0451 221 FunFam Nuclear transcription factor Y subunit gamma 27 138 - -
HCH3g0451 221 MobiDBLite consensus disorder prediction 201 221 - -
HCH3g0451 221 MobiDBLite consensus disorder prediction 1 29 - -
HCH3g0451 221 Gene3D Histone, subunit A 26 138 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0451 HCH-Chr3:2867793 HCH8g0128 HCH-Chr8:5282909 1.10E-50 dispersed
HCH4g1759 HCH-Chr4:30658108 HCH3g0451 HCH-Chr3:2867793 2.40E-52 transposed
HCH6g1213 HCH-Chr6:46570790 HCH3g0451 HCH-Chr3:2867793 9.00E-23 transposed
HCH3g0451 HCH-Chr3:2867793 HCH8g1484 HCH-Chr8:49186037 1.10E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33311 PF00808 CBFD_NFYB_HMF 2.80E-17 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0451 - - - 0.0