Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0471 | ATGGGTTGCGTTCTTGGCAAACAAGCATCCGAGGATCGCCGGCGCCACCGCCGCAGAAGCATCGATAATCATCTTCAATCTCGTGTTAATGAAGACACAGTTAAAAAACACGTGGCAGACACAGAAAACCGACAGAACGAGGATTTCTTGTCGATAGAACACCGGAAACCTTCGCCGGGCCTTCACCGGAGGAATGAACAAGGTTGGCCCACGTGGCTCGTGGCCGTCGCCGGCGACGTTATTCAAGATTGGACTCCTCGTCGAGCTAATACATTCGAGAAGCTTGCTAAGATAGGGCAAGGGACTTATAGCAATGTGTATAAAGCTAGAGATCTTATAAGTGGGAAAATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTAGAGCCAGAGAGTGTGAGATTCATGGCTAGAGAAATTTTGGTATTGAAAAGACTTGATCATCCAAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCAAGAATGTCTTGTAGTCTTTATTTGGTTTTTGAGTATATGGAACATGATCTTGCTGGACTTTCTGCTGGTCAAGGAGTTAAATTCACTGAGCCTCAGATCAAATGCTATATGAAGCAACTATTGTCTGGGCTAGAGCATTGTCACAGCCGAGGTGTTTTGCATCGTGATATTAAGGGTTCGAATTTGCTAATTGACAATGAAGGAGTTCTAAAAATAGCTGATTTTGGGCTAGCTACTTTTTATGATTCTGATCAGAAGCAGCCTATGACTAGTAGAGTCGTAACCCTTTGGTATCGCCCACCTGAACTGTTACTTGGAGCTACTTTTTATGGTGTTGGTGTTGATCTTTGGAGTGCTGGCTGTATCATGGCAGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTCGAACAACTTCATAAGATATTTAAGTTATGTGGCTCTCCGTCCGAGGATTACTGGAGGAAATACAGATTGCCAAATGCAACTCTTTTTAAGCCCCAACAACCCTATACGCGCTGCATTGCAGAAAACTTCAAGGATTTTCCATCTTCTTCTTTACCTCTTATCGAGTCTCTTCTTTCAATGGATCCTGATGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACCACTGAACCTTGTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTACCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAATGAGAAAGCTACAGCTGTTGATGGTGCCAGGAAAGTTAGAGTGCGGGATCGGGTTGGTCGTGCAATTCCGGCTCCTGAAGCCAATGCAGAGATTCAAGGAAACTTAGATAGATGGAGAAATGTGACGAAAGCAAATGCCAAAAGCAAGAGTGAAAAATTTCCACCACCTCATCAAGATGGGGCTGTCGGGTTCCCACCGCATGAGACATCGGAAAGGGGCCCTGTATCATTTGGCACGGCAGATACTTCATTCAGCTCCTCTATTTTTAGCTCAAAATCTGGATCTGTTAAAAGTATTGGAGCGCCTGGGGGACCTTCCAGGAGGGGGAAAGCCAATAAAGACAATCCCTCAATGTCGTCGTCTCGAAAATTCATGCGTGCGCTCAAACCATCGATTGCATTATCAATGGATATGTTGTTGAAGGGTAAATAA | 1671 | 44.4 | MGCVLGKQASEDRRRHRRRSIDNHLQSRVNEDTVKKHVADTENRQNEDFLSIEHRKPSPGLHRRNEQGWPTWLVAVAGDVIQDWTPRRANTFEKLAKIGQGTYSNVYKARDLISGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGVLKIADFGLATFYDSDQKQPMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCIMAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWRKYRLPNATLFKPQQPYTRCIAENFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPCACEPSSLPKYPPTKELDVKLRDEEARRQRGLNEKATAVDGARKVRVRDRVGRAIPAPEANAEIQGNLDRWRNVTKANAKSKSEKFPPPHQDGAVGFPPHETSERGPVSFGTADTSFSSSIFSSKSGSVKSIGAPGGPSRRGKANKDNPSMSSSRKFMRALKPSIALSMDMLLKGK | 556 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3016538 | 3020288 | - | evm.model.ptg000005l.1046 | HCH3g0471 | 541199 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0471 | 556 | CDD | STKc_CDK9_like | 92 | 376 | - | - | |
HCH3g0471 | 556 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 380 | IPR011009 | - | |
HCH3g0471 | 556 | ProSiteProfiles | Protein kinase domain profile. | 92 | 376 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH3g0471 | 556 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
HCH3g0471 | 556 | PANTHER | CELL DIVISION PROTEIN KINASE | 91 | 376 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
HCH3g0471 | 556 | Gene3D | Phosphorylase Kinase; domain 1 | 79 | 174 | - | - | |
HCH3g0471 | 556 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 416 | - | - | |
HCH3g0471 | 556 | FunFam | probable serine/threonine-protein kinase At1g54610 | 175 | 416 | - | - | |
HCH3g0471 | 556 | MobiDBLite | consensus disorder prediction | 488 | 510 | - | - | |
HCH3g0471 | 556 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0471 | 556 | ProSitePatterns | Protein kinases ATP-binding region signature. | 98 | 121 | IPR017441 | GO:0005524(InterPro) | |
HCH3g0471 | 556 | FunFam | probable serine/threonine-protein kinase At1g54610 | 79 | 174 | - | - | |
HCH3g0471 | 556 | SMART | serkin_6 | 92 | 376 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH3g0471 | 556 | MobiDBLite | consensus disorder prediction | 456 | 537 | - | - | |
HCH3g0471 | 556 | Pfam | Protein kinase domain | 92 | 376 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0471 | HCH-Chr3:3016538 | HCH7g1131 | HCH-Chr7:44079946 | 2.80E-199 | dispersed | |
HCH3g0471 | HCH-Chr3:3016538 | HCH10g0786 | HCH-Chr10:7981404 | 1.30E-185 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81386 | PF00069 | Pkinase | 1.90E-67 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g0471 | K08819 | - | csv:101205716 | 915.605 |