Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0471 ATGGGTTGCGTTCTTGGCAAACAAGCATCCGAGGATCGCCGGCGCCACCGCCGCAGAAGCATCGATAATCATCTTCAATCTCGTGTTAATGAAGACACAGTTAAAAAACACGTGGCAGACACAGAAAACCGACAGAACGAGGATTTCTTGTCGATAGAACACCGGAAACCTTCGCCGGGCCTTCACCGGAGGAATGAACAAGGTTGGCCCACGTGGCTCGTGGCCGTCGCCGGCGACGTTATTCAAGATTGGACTCCTCGTCGAGCTAATACATTCGAGAAGCTTGCTAAGATAGGGCAAGGGACTTATAGCAATGTGTATAAAGCTAGAGATCTTATAAGTGGGAAAATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTAGAGCCAGAGAGTGTGAGATTCATGGCTAGAGAAATTTTGGTATTGAAAAGACTTGATCATCCAAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCAAGAATGTCTTGTAGTCTTTATTTGGTTTTTGAGTATATGGAACATGATCTTGCTGGACTTTCTGCTGGTCAAGGAGTTAAATTCACTGAGCCTCAGATCAAATGCTATATGAAGCAACTATTGTCTGGGCTAGAGCATTGTCACAGCCGAGGTGTTTTGCATCGTGATATTAAGGGTTCGAATTTGCTAATTGACAATGAAGGAGTTCTAAAAATAGCTGATTTTGGGCTAGCTACTTTTTATGATTCTGATCAGAAGCAGCCTATGACTAGTAGAGTCGTAACCCTTTGGTATCGCCCACCTGAACTGTTACTTGGAGCTACTTTTTATGGTGTTGGTGTTGATCTTTGGAGTGCTGGCTGTATCATGGCAGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTCGAACAACTTCATAAGATATTTAAGTTATGTGGCTCTCCGTCCGAGGATTACTGGAGGAAATACAGATTGCCAAATGCAACTCTTTTTAAGCCCCAACAACCCTATACGCGCTGCATTGCAGAAAACTTCAAGGATTTTCCATCTTCTTCTTTACCTCTTATCGAGTCTCTTCTTTCAATGGATCCTGATGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACCACTGAACCTTGTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTACCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAATGAGAAAGCTACAGCTGTTGATGGTGCCAGGAAAGTTAGAGTGCGGGATCGGGTTGGTCGTGCAATTCCGGCTCCTGAAGCCAATGCAGAGATTCAAGGAAACTTAGATAGATGGAGAAATGTGACGAAAGCAAATGCCAAAAGCAAGAGTGAAAAATTTCCACCACCTCATCAAGATGGGGCTGTCGGGTTCCCACCGCATGAGACATCGGAAAGGGGCCCTGTATCATTTGGCACGGCAGATACTTCATTCAGCTCCTCTATTTTTAGCTCAAAATCTGGATCTGTTAAAAGTATTGGAGCGCCTGGGGGACCTTCCAGGAGGGGGAAAGCCAATAAAGACAATCCCTCAATGTCGTCGTCTCGAAAATTCATGCGTGCGCTCAAACCATCGATTGCATTATCAATGGATATGTTGTTGAAGGGTAAATAA 1671 44.4 MGCVLGKQASEDRRRHRRRSIDNHLQSRVNEDTVKKHVADTENRQNEDFLSIEHRKPSPGLHRRNEQGWPTWLVAVAGDVIQDWTPRRANTFEKLAKIGQGTYSNVYKARDLISGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGVLKIADFGLATFYDSDQKQPMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCIMAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWRKYRLPNATLFKPQQPYTRCIAENFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPCACEPSSLPKYPPTKELDVKLRDEEARRQRGLNEKATAVDGARKVRVRDRVGRAIPAPEANAEIQGNLDRWRNVTKANAKSKSEKFPPPHQDGAVGFPPHETSERGPVSFGTADTSFSSSIFSSKSGSVKSIGAPGGPSRRGKANKDNPSMSSSRKFMRALKPSIALSMDMLLKGK 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3016538 3020288 - evm.model.ptg000005l.1046 HCH3g0471 541199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0471 556 CDD STKc_CDK9_like 92 376 - -
HCH3g0471 556 SUPERFAMILY Protein kinase-like (PK-like) 85 380 IPR011009 -
HCH3g0471 556 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0471 556 MobiDBLite consensus disorder prediction 1 21 - -
HCH3g0471 556 PANTHER CELL DIVISION PROTEIN KINASE 91 376 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH3g0471 556 Gene3D Phosphorylase Kinase; domain 1 79 174 - -
HCH3g0471 556 Gene3D Transferase(Phosphotransferase) domain 1 175 416 - -
HCH3g0471 556 FunFam probable serine/threonine-protein kinase At1g54610 175 416 - -
HCH3g0471 556 MobiDBLite consensus disorder prediction 488 510 - -
HCH3g0471 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0471 556 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524(InterPro)
HCH3g0471 556 FunFam probable serine/threonine-protein kinase At1g54610 79 174 - -
HCH3g0471 556 SMART serkin_6 92 376 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0471 556 MobiDBLite consensus disorder prediction 456 537 - -
HCH3g0471 556 Pfam Protein kinase domain 92 376 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0471 HCH-Chr3:3016538 HCH7g1131 HCH-Chr7:44079946 2.80E-199 dispersed
HCH3g0471 HCH-Chr3:3016538 HCH10g0786 HCH-Chr10:7981404 1.30E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81386 PF00069 Pkinase 1.90E-67 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0471 K08819 - csv:101205716 915.605