Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0474 ATGGAAGCCTATTCCTATCATCAATACCAACCCTTTCTCCTTGACTCAGTTTTCTTGCCAAACAACCCTCTGAAAATGCCTGGTTTTATGGATCATGAAGCAAATATCAACGCCAATTGTTTCTCTCAGTTTTATCCACAAGAACCTATTCACCACTTTCCTTTTGACAATAGCTGTGAGCTTTCTGTGACCAAAAAACAAACCTCTGAATCTTCTACTTTGGTCGATAAAGCCGAAAGTAGCGATGGCGACGGCACCGCCGTTGTTAATCAGGTGAAGGTGGCAACTTCACCATATAATAAGAAAAGGAAGTACAGCAGAAACAATTCCACAGCTAGCTCCACTCAATCCAAGGCTGCAACAGAAAGCACAGGGAAGAAACAGAAGAAAGGGGAAGAAGAAAGAGATCAGAAACCTAAAACTGGAAAGAAAGAAGAGAAGAAAGTTTCAGAAGAAGCAGCAACGACTGGTTACATTCACGTCAGAGCTAGGAGGGGCCAAGCAACAGATAGCCACAGCCTTGCAGAAAGGGTAAGAAGAGAGAAAATCAGTGAAAGGATGAAGACGTTGCAACGACTCGTTCCTGGTTGCGATAAGGTTACAGGAAAGGCCCTCATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTAGAGTTTCTCTCCATGAAACTTGCATCTTTGAATCCAATTTTCTTCGACTTCAGAATGGATTTGGACGGCCTCATGATCCAACCAGAGACTACATCAATGAGTAGTATAACTCCACAGCTGCCTGCTATGGCGCAATGCAATGTCGTCGCTCCGCCGTCTATGATCGATACTACCGCCCCTACCGCCACAACCCCGACCATGGCCGCCGCAAATAACTACCCTTTAATGGACCATTCTTCAGCCAACTTATTTTTACTTCAACAAGGACTAAACTCAAACATCTACTCTCAGTCTCAGTCTCAGGATAACGTTAAAGTATCATCATGGGATGTCGAAGAACAGAGACGAAAGCTTCTTATTTCATCAGCGATGGGCGACAACTTGTGTTACTTCCATTAA 1062 43.41 MEAYSYHQYQPFLLDSVFLPNNPLKMPGFMDHEANINANCFSQFYPQEPIHHFPFDNSCELSVTKKQTSESSTLVDKAESSDGDGTAVVNQVKVATSPYNKKRKYSRNNSTASSTQSKAATESTGKKQKKGEEERDQKPKTGKKEEKKVSEEAATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSMSSITPQLPAMAQCNVVAPPSMIDTTAPTATTPTMAAANNYPLMDHSSANLFLLQQGLNSNIYSQSQSQDNVKVSSWDVEEQRRKLLISSAMGDNLCYFH 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3051302 3053245 - evm.model.ptg000005l.1043 HCH3g0474 541202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0474 353 MobiDBLite consensus disorder prediction 73 175 - -
HCH3g0474 353 SMART finulus 173 223 IPR011598 GO:0046983(InterPro)
HCH3g0474 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 233 IPR036638 GO:0046983(InterPro)
HCH3g0474 353 MobiDBLite consensus disorder prediction 123 153 - -
HCH3g0474 353 FunFam Basic helix-loop-helix transcription factor 164 236 - -
HCH3g0474 353 Gene3D - 164 234 IPR036638 GO:0046983(InterPro)
HCH3g0474 353 MobiDBLite consensus disorder prediction 73 122 - -
HCH3g0474 353 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983(InterPro)
HCH3g0474 353 CDD bHLH_AtBPE_like 157 242 - -
HCH3g0474 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983(InterPro)
HCH3g0474 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 64 323 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0474 HCH-Chr3:3051302 HCH5g1042 HCH-Chr5:12081685 3.70E-32 dispersed
HCH3g0474 HCH-Chr3:3051302 HCH8g1514 HCH-Chr8:49298340 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33314 PF00010 HLH 6.90E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0474 - - - 0.0