Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0476 ATGCTTTCTAGAGTTGGAAATGTTGTTTGGATGGAAAATAGAGAAGATGAAAACTCTCCTCCTTCATGGACCAAAAACAATCCCTTGACAAACTGTGTTGTTTTGGAAAACAACAAAGATGATATGAATTTGAATTCTCTCTCTTCTTTCAAATCCATGCTTGATGTTGTGGATGATGGGTGGTGTTTGAATAATAACACCATTCATAACCAAACAGATATGAATGAAATCACTTTCTCTCAGAATTTCACTGACCACCCAGATAATTTGTTGCTTCACACAGGGGATTCTTCCTCTTCTTGTTCTCCTTCTTCATCTTTATTCAATAACATTGACCCTTCTCAATTGCATTTTTTTCTTCCTCAAAACCACACCTTTTCTTCACTTCATAAAGTCATATCTAATAACCCTTCAGAGCATGGCTTTGATTTGGGTTCAGAAGTGGGATTTCTTGATGTTCAAGCTTCAAACGTTTCAACTTTGATGAATAATGGAGGTGGGTTATTAACTGGGTTTACTGATTTAAGCTCAAATAGTCAGATAAATAGTTCTAATTTGTGTTTAGGACCTCAGTTAATGAATTCTAATTTGACCCAAATGAGTGAAAATTGTTCTGGTTTAGTGGGGTTTCAGGGTTTTGATGAGAATTTAGGAAATGGGAATGGGAATGCGAATGGGAATGCTTTGTTTCTTAAAAGGTCTAATCTTTTGAGACCACTTGAATCTTTTCCTTCAGTAGGAGCTCAACCAACCCTTTTTCAGAAAAGGGTTGCTCTCAGGAAAAGCTTAGGTGATAAGGGAAGCAATGTGGGAGTTTTGAGTTCGGATGGCGGTTGGTTTTCGAATAGGATTGATGGGGGTGTGGGGAGGAATGAGCTGAGTGAAGAGATTGGGAAGAAGAGGAAAATGATGTATGGGGATGATTTGGAAGATGCTAACATTGACACATCGAGTTTCAATTACGATTCCGATGAGTTTACAGAGACTAATAAGATGAGTGAGAATGGTAGGAGTGTTGCTAACAACTCTAATGCGAATAGTACTGTTACTGGTGGTGACCAAAAGGGGAAGAAGAAGGGACTTCCTGCTAAGAATTTGATGGCAGAGAGGCGTCGCAGGAAGAAGCTCAATGATAGATTGTACATGCTGAGGTCCGTTGTCCCGAAAATCAGCAAAATGGATAGAGCTTCAATCCTTGGGGATGCAATCGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTTCATAATGAATTGGAGTTTACCCCTTCTGGTACTGCATTGACACCGAGCACAAGCTTTCACCCCCTGACGCCTACTCCACCGAGCCTCTCCAATCGTATCAAGGAGGAGCTTTGTCCAAGCTCATTTGCCAGTCCAAATGGCCAACCTGCAAGGGTCGAAGTAAGGCTTCGAGAAGGGCGAGCTGTAAATATACACATGTTTTGTGGTCGTCGACCTGGCCTCTTGCTCTCCACGGTGAGGGCGTTGGATAATCTCGGATTAGACATCCAGCAAGCTGTGATTAGCTGCTTTAATGGTTTTGCTATGGACATTTTCCGAGCAGAGCAATGCAGTGAAGGGCAGGATATCCATCCTGAGCAGATAAAAGCAATGCTATTGGATTCAGCTGGTTTCAGTGGTGCAACATAG 1656 41.49 MLSRVGNVVWMENREDENSPPSWTKNNPLTNCVVLENNKDDMNLNSLSSFKSMLDVVDDGWCLNNNTIHNQTDMNEITFSQNFTDHPDNLLLHTGDSSSSCSPSSSLFNNIDPSQLHFFLPQNHTFSSLHKVISNNPSEHGFDLGSEVGFLDVQASNVSTLMNNGGGLLTGFTDLSSNSQINSSNLCLGPQLMNSNLTQMSENCSGLVGFQGFDENLGNGNGNANGNALFLKRSNLLRPLESFPSVGAQPTLFQKRVALRKSLGDKGSNVGVLSSDGGWFSNRIDGGVGRNELSEEIGKKRKMMYGDDLEDANIDTSSFNYDSDEFTETNKMSENGRSVANNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFTPSGTALTPSTSFHPLTPTPPSLSNRIKEELCPSSFASPNGQPARVEVRLREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDIHPEQIKAMLLDSAGFSGAT 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3076916 3080456 + evm.model.ptg000005l.1041 HCH3g0476 541204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0476 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 409 IPR011598 GO:0046983(InterPro)
HCH3g0476 551 Gene3D - 354 423 IPR036638 GO:0046983(InterPro)
HCH3g0476 551 Pfam Helix-loop-helix DNA-binding domain 367 409 IPR011598 GO:0046983(InterPro)
HCH3g0476 551 MobiDBLite consensus disorder prediction 331 363 - -
HCH3g0476 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 428 IPR036638 GO:0046983(InterPro)
HCH3g0476 551 SMART finulus 366 415 IPR011598 GO:0046983(InterPro)
HCH3g0476 551 MobiDBLite consensus disorder prediction 331 353 - -
HCH3g0476 551 CDD ACT_UUR-ACR-like 480 544 - -
HCH3g0476 551 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 319 547 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH3g0476 551 CDD bHLH_AtAMS_like 363 426 - -
HCH3g0476 551 FunFam BHLH transcription factor 356 424 - -
HCH3g0476 551 Coils Coil 399 419 - -
HCH3g0476 551 Pfam Plant bHLH transcription factor, ACT-like domain 468 541 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0426 HCH-Chr14:33292730 HCH3g0476 HCH-Chr3:3076916 2.90E-34 dispersed
HCH3g0476 HCH-Chr3:3076916 HCH4g0295 HCH-Chr4:1901838 1.90E-35 dispersed
HCH3g0476 HCH-Chr3:3076916 HCH9g0022 HCH-Chr9:154219 2.00E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33315 PF00010 HLH 2.10E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0476 - - - 0.0