Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0483 ATGAAATCCTCCGTCTTCTGCTTTCCTGTTCTTGTCCTCATTCTTAGTTCCGCTGTCGTGTCCTCGGCTGGAACAGATTCCGATGAAGACGGTGGTGAATATCCCGTCCTAAGCGTTCAGGAGTTGCCGGAATTCTCACCCCTCGATGACTTCCTCTCCTACGGGTTTTACCTGAAGACTTGCCCCGATGTCGACGGCATCATTCACCGCAAACTCAAACAATGGTTCGATAAGGATAACTCCATTGCTGCAAGCCTCATTCGCCTCCATTTCCACGACTGCGCCGTCAAGGGATGCGATGGTTCTATTCTTCTTGATTATGACGGAAGTGAGAGGAGAGCTCCGGCGAGCAAGACATTGCGGGGTTTCCAAGTGATCGATGATATAAAAGCCGAGTTAGAAAAACGGTGCCCAAAAACAGTTTCTTGTGCCGATATTTTGACCGCCGCCGCCAGAGAGGCTACTGTTTTGGTCGGCGGGCCGTATTGGATGATACCTTACGGAAGAAAAGATGGTTTGGAATCTATTGCTAAAGATACTGAATTGATTCCGATGGCGGTTGAAGACGTCACTGACCTGATTGAACGATTTCAATCTTGGGGTTTGAATCTTTTAGATTTGGTCGTTCTAGGAGGAGCACACACCATTGGAAGGGCCTCATGCGGGGCGATTCAAAGTCGGCTTTACAACTACAACGCAACAAGAAAACCAGACCCATCCCTGGACCCAAAGTACTTGAATTTCTTGAGAAGAAAATGCCGATGGGCTTCCGATTACGTGGATCTCGACGCTACGACGCCGAGGAAATTCGACAACGCATATTACACGAATCTCCCGAAGAAGATGGGTCTTTTGTCAACTGATTCAGCTCTCTACACGGATCCAAGAACTTCTCCCATTGTCAAAGCTTTGGCTTATCAACCTTCCGTTTTCCGCAATCAGTTTGCTGTTTCCATGGCCAAGCTTGCCAACGTTCAAGTTCTTACTGGTCTTTATGAAGGCGAGATTCGAACCAATTGCAATTTTAGAAACGCTCGTTGA 1041 47.65 MKSSVFCFPVLVLILSSAVVSSAGTDSDEDGGEYPVLSVQELPEFSPLDDFLSYGFYLKTCPDVDGIIHRKLKQWFDKDNSIAASLIRLHFHDCAVKGCDGSILLDYDGSERRAPASKTLRGFQVIDDIKAELEKRCPKTVSCADILTAAAREATVLVGGPYWMIPYGRKDGLESIAKDTELIPMAVEDVTDLIERFQSWGLNLLDLVVLGGAHTIGRASCGAIQSRLYNYNATRKPDPSLDPKYLNFLRRKCRWASDYVDLDATTPRKFDNAYYTNLPKKMGLLSTDSALYTDPRTSPIVKALAYQPSVFRNQFAVSMAKLANVQVLTGLYEGEIRTNCNFRNAR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3111123 3112901 + evm.model.ptg000005l.1034 HCH3g0483 541211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0483 346 FunFam Peroxidase 184 322 - -
HCH3g0483 346 CDD secretory_peroxidase 52 342 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH3g0483 346 PANTHER PEROXIDASE 25-RELATED 46 340 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH3g0483 346 SUPERFAMILY Heme-dependent peroxidases 52 344 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 FunFam Peroxidase 55 195 - -
HCH3g0483 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
HCH3g0483 346 ProSiteProfiles Plant heme peroxidase family profile. 51 344 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 277 294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 317 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 61 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 159 174 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 85 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Plant peroxidase signature 261 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 ProSitePatterns Peroxidases active site signature. 83 94 IPR019794 GO:0004601(InterPro)
HCH3g0483 346 Gene3D Peroxidase, domain 2 184 322 - -
HCH3g0483 346 PRINTS Haem peroxidase superfamily signature 263 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Haem peroxidase superfamily signature 83 97 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 PRINTS Haem peroxidase superfamily signature 159 171 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0483 346 Gene3D - 55 344 - -
HCH3g0483 346 Pfam Peroxidase 70 305 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0061 HCH-Chr10:491422 HCH3g0483 HCH-Chr3:3111123 2.00E-51 dispersed
HCH2g0950 HCH-Chr2:52882651 HCH3g0483 HCH-Chr3:3111123 1.10E-105 dispersed
HCH3g0483 HCH-Chr3:3111123 HCH4g1116 HCH-Chr4:7294213 1.20E-67 dispersed
HCH3g0483 HCH-Chr3:3111123 HCH14g0262 HCH-Chr14:30532058 1.70E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0483 K00430 - csv:101208042 542.347