Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0495 ATGAAGAGACGACCAGAAGAAAACGTTAACCCTCTTAAGGCCAAGACTCAAGCTGTCGCATCTCAAGACCTGAAAAGTCCACGCCTTTTCGGTGGATTGGTTTTGGAAATGGCTCTGATAAAAGTGAAATTGATTTATCTGCTTCTGATGTTATTTTGGATGTCCAGAATTGATGCCTCTGACCGGATGTCGAATGAGTCAGTTACTGGGCATCCAGCTGCTATCAGAAATGAAAACCCAAAAGGTCGTTGCCCACATGATTGGTTTATCAGCCCAAACAAGAATAAGTGTTATGGTTACATGTCAAGCCCTCAATCATGGAACGAGTCAGAGACCCAATGTAATGGTTATGGCGGGAGCTTAGCAGCACTGACTACATATCAAGAGTTCAGCTTTGCACGGAATATGTGTACGGGAATTCTTGGTGGCTGTTGGGTTGGTGGCAAAGCGTTTAACTCTACAAATGGTTTTGTTTGGAAGTGGTCAGATAATTTTTCAAACTGGAACGATTCCCTCTTTTCCAGTGCAACTTTGAAATCCAACTGCAAAAACGTCTCTTGCCACATGAATAATACGATTGAAATATGTACTTTGATATCTGATGGACCAGCAACACCACTCCTGACAGATGAGAAATGCAACATCTCACATCCTTCTATATGCATGCTCCATATAGATGATAGGTGCAAACACATGCACTGCCACAGGGAATATCTTGTCATTCTAGCAGTTGTAAGTGGGTTGATACTTTGCACAATGTTAGCCGTAGTGGTTTGGCTTCTTGCCTATAAGAGGAGCAAAAAGCGGAGGAGGTCTCGAAAGCCATCTAATCCTGCAGCTTCTGCCTTGGTCCCTCCTGCTTGGAAAGTGTTTACCAAAGAAGAGCTAAGGTCGATTACCAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACAAAAACAGGTGGTACATACAGTGGGCTTCTACCTGATGGTTCTAGAGTGGCAATTAAAAGGTTAAAGAGGTCCAGCTTTCAGAGGAAAAAAGAGTTCCATTCTGAAATTGGAAGAGTTGCAAGGCTTCGGCATCCAAATTTGGTTGCTCTGAAAGGCTGCTGCTATGACCACGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTGGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGAAGCATAGATTGGACCATGAGAATGAAAATTGCCACAACTCTTGCCCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACACGTAGTACATCGTGATATTCGTGCTAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTCATGGGCGTTGGTCTCTCGAAATTGGTAGCATATGAAGTAATGCATGAGAGGACAATGATGGCAGGAGGAACTTATGGATACCTGGCTCCAGAGTTTGTGTATAAAAATGAGCTTACAACAAAGAGCGATGTTTACAGTTTTGGGGTCCTGCTGCTCGAAATCGTAACCGGGCGAAGGCCTGCACAGGCCGTTGATTCTGTCGGTTGGCAGAGCATTTTCGAATGGGCGACTCCCCTGGTGCAGGCTCACCGATACCTAGATCTGTTGGACCCCCATATAACAGCCACTTCTACTTCTGAGATTCCGGAGGCGGGCGTTGTTCAGAAAGTGGTGGATCTTGTGTATGCTTGCACACAGCATGTCCCATCCATGCGCCCTAGAATGTCTCATATTGTTCATCAGCTGCAACAGTTGGCCTCTTCACCTCTTAGTATGAAGTAG 1779 44.8 MKRRPEENVNPLKAKTQAVASQDLKSPRLFGGLVLEMALIKVKLIYLLLMLFWMSRIDASDRMSNESVTGHPAAIRNENPKGRCPHDWFISPNKNKCYGYMSSPQSWNESETQCNGYGGSLAALTTYQEFSFARNMCTGILGGCWVGGKAFNSTNGFVWKWSDNFSNWNDSLFSSATLKSNCKNVSCHMNNTIEICTLISDGPATPLLTDEKCNISHPSICMLHIDDRCKHMHCHREYLVILAVVSGLILCTMLAVVVWLLAYKRSKKRRRSRKPSNPAASALVPPAWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYSGLLPDGSRVAIKRLKRSSFQRKKEFHSEIGRVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRSIDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTMMAGGTYGYLAPEFVYKNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHIVHQLQQLASSPLSMK 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3193458 3196834 + evm.model.ptg000005l.1022 HCH3g0495 541223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0495 592 SUPERFAMILY C-type lectin-like 45 224 IPR016187 -
HCH3g0495 592 SMART CLECT_2 84 222 IPR001304 -
HCH3g0495 592 FunFam C-type lectin receptor-like tyrosine-protein kinase 281 379 - -
HCH3g0495 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0495 592 PANTHER OS01G0750732 PROTEIN 197 585 IPR050885 -
HCH3g0495 592 SMART tyrkin_6 307 581 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
HCH3g0495 592 Gene3D Transferase(Phosphotransferase) domain 1 380 587 - -
HCH3g0495 592 Gene3D Phosphorylase Kinase; domain 1 263 379 - -
HCH3g0495 592 CDD CLECT 96 221 - -
HCH3g0495 592 ProSiteProfiles Protein kinase domain profile. 304 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0495 592 SUPERFAMILY Protein kinase-like (PK-like) 277 581 IPR011009 -
HCH3g0495 592 ProSiteProfiles C-type lectin domain profile. 93 222 IPR001304 -
HCH3g0495 592 Gene3D - 69 224 IPR016186 -
HCH3g0495 592 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 380 592 - -
HCH3g0495 592 Pfam Lectin C-type domain 104 222 IPR001304 -
HCH3g0495 592 Pfam Protein tyrosine and serine/threonine kinase 309 581 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0495 HCH-Chr3:3193458 HCH3g0635 HCH-Chr3:4419389 4.00E-55 dispersed
HCH3g0495 HCH-Chr3:3193458 HCH6g0245 HCH-Chr6:3531102 1.60E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81388 PF07714 PK_Tyr_Ser-Thr 5.10E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0495 - - - 0.0