Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0501 ATGGAGTCAAGAATGGAGATTGGTGAGGATTCGAATGATAAAGATGGTATGTGGGCTTTGAATCAGCAACTTGATCAGCCAATGGAGGAGGAGGCGAAGCAGCTACGAAATATGTATCAGGAAAAGAATCACTCTGTGTTTATGCTTCTACAATATGCATTCCAAAGCCTTGGAATAGTGTACGGTGATTTGGGTACTTCTCCGTTGTACGTCTTCTTCAACACGTTCCCCGATGGAGTCGAAGATACAGAGGATTTGATAGGAGCCCTTTCGTTGATTATATACTCTCTAACTCTTATTCCTCTGATTAAGTATGTGTTTATCGTCTGTAAGGCAAATGATAATGGTCAAGGTGGAACATTTGCTCTATATTCATTACTATGTCGCCATGCAAAAATATTAACTATTCCTACCCACGACGACGCTGATGAGAAGCTTACAACTTATAGTCGTTCTACATACCATGAAAAATCATTTGCTGCAAAAACCAAAAGATGGCTAGAAGGACATCTTTTTAAGAAAACTGCACTCCTTGTTCTTGTTCTCGTGGGCTCTTGCATGGTGATTGGCGATGGGATTCTAACGCCTGCTATTTCAGTTCTTTCTGCTGTTGGGGGAATCAATGTTGGTCGTGCAAAGATAAGTAATGATGTTGCTGTTGCTGTTGCTGTTGCTATACTTGTATTCTTGTTCAGCATGCAACGTTACGGTACAGATAAAGTTGGTTGGCTTTTTGCACCAGTAGTTTTTCTGTGGTTCATCTTAATAGGAGGCATTGGCATATTTAACATCTGGAAATATGATAGCGGTGTCCTGAGAGCTTTTTCTCCCGTGTGTATGTATCGGTATTTTAAAAGGGGAAGGAAAGATGGATGGATATCCCTTGGAGGGATCATGCTTAGTATCACAGGAACGGAAGCACTCTTTGCAGACCTATCACACTTTCCGGTTTCCTCCATACAGATTGCTTTTACCACAGTTGTATTTCCTTGCCTCCTTTTAGCCTACACTGGACAAGTTGCCTACCTTATGAAAAACCCGGATGACGTTGTTGGCGCCTTTTATCATTCAATTCCAGAGACTATATATTGGCCTGTATTTCTTGTTGCAACTGCTGCTGCTATCGTTGCAAGCCAAGCCACCATATCTGCAACTTTTTCACTAGTCAAGCAAGCCCTTGCGCTTAGTTGTTTTCCAAGAGTCAAAGTTGTACATACTTCAAAGACGTTCCGCAATCAGATATATATTCCCGATATCAATTGGATCCTTATGATTCTTTGTATTGGCGTGACAGCCGGATTCAAAAATCAAAGCCAGATTGGAAATGCTTCTGGGACAGCAGTGATAATAGTGATGCTGGTAACTACATTTCTCATGACTTTAATAATGATATTAGTATGGCGGTCGCACTGGACTCTAGTCGTGCTCTTCACTGGCTTATCACTGATTGTAGAGGGCACATACTTCTCCTCTGTTGTCCAGAAGGTTTACCAAGGAGGGTGGGTTCCTTTAGTTATAGCAGCAGCATTTTTCATCATCATGTACAGTTGGCATTATGGTTCAGCTAAACGTTATGAGATTGAGATGCACAGTAAGGTTTCAATGGCATGGATTCTCGGTCTTGGCCCCAGTTTAGGACTTGTCCGGGTGCCCGGCATAGGGCTTGTGTACACAGAGCTGGCAAGCGGAGTCCCTCACATCTTTTCTCACTTCATCACAAACTTGCCTGCCATTCATTCTGTTGTTGTTTTTGTCTGTTTGAAGTGTCTGCCTGTCTGCACAGTGCCAGAAGAAGAGAGATTTCTAGTTAAGCGGATCGGACCGAAGAACTTCCACATGTTCCGATGTGTGGCTAGATATGGTTACAAAGACCTCCATAAGAAAGATGATGATTTTGAGAACAAAATTTTTGATAGCCTCTTCTTGTTTGTCAGGCTTGAGTCTTTGATGGAAGGAGGGTCTTCAAATTCAGATGTGTCTAGTTTAATTGATCAAGAACCTGAAGCAATAGCAGAGTGCGCGTCAAACAATCATAACACAACTTACTCTTATGTGGAATCGATGAACATTGTAACAGTGGATTCAGATGTGTCTAGTTTAATTAATCAGGAACCCCAAACAATTGCAGAGTGTACATTGAACAACCATAATAGAACTTACTCGTCTGTGGAATCAATGAACATTATAACAGTGGACTCGATCGAGCTTGACGATTCGCCATTGCGTGAAAACCCTACCATGATATCATCTAATCAAGAAGTCAACCAAATTGAAATGAATGAGTTAGAATTCTTGACTAGCTGTAGAAACATGGGAGTTGTACACATACTTGGGAATACAGTTATCACAGCTAGAAGGAACTCCAATTTCTTCAAAAGGTTTGGCATCGATTATGTTTATGCATTTCTTAGGAAGATCTGCAGGGATAATAGTGTGATGTTCAATATTCCCCATGAAAGTTTGCTTAATGTTGGGCAAACATTTTATGTATGA 2493 41.12 MESRMEIGEDSNDKDGMWALNQQLDQPMEEEAKQLRNMYQEKNHSVFMLLQYAFQSLGIVYGDLGTSPLYVFFNTFPDGVEDTEDLIGALSLIIYSLTLIPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKILTIPTHDDADEKLTTYSRSTYHEKSFAAKTKRWLEGHLFKKTALLVLVLVGSCMVIGDGILTPAISVLSAVGGINVGRAKISNDVAVAVAVAILVFLFSMQRYGTDKVGWLFAPVVFLWFILIGGIGIFNIWKYDSGVLRAFSPVCMYRYFKRGRKDGWISLGGIMLSITGTEALFADLSHFPVSSIQIAFTTVVFPCLLLAYTGQVAYLMKNPDDVVGAFYHSIPETIYWPVFLVATAAAIVASQATISATFSLVKQALALSCFPRVKVVHTSKTFRNQIYIPDINWILMILCIGVTAGFKNQSQIGNASGTAVIIVMLVTTFLMTLIMILVWRSHWTLVVLFTGLSLIVEGTYFSSVVQKVYQGGWVPLVIAAAFFIIMYSWHYGSAKRYEIEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCLKCLPVCTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDDDFENKIFDSLFLFVRLESLMEGGSSNSDVSSLIDQEPEAIAECASNNHNTTYSYVESMNIVTVDSDVSSLINQEPQTIAECTLNNHNRTYSSVESMNIITVDSIELDDSPLRENPTMISSNQEVNQIEMNELEFLTSCRNMGVVHILGNTVITARRNSNFFKRFGIDYVYAFLRKICRDNSVMFNIPHESLLNVGQTFYV 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3243838 3248239 - evm.model.ptg000005l.1016 HCH3g0501 541229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0501 830 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 40 829 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH3g0501 830 Pfam K+ potassium transporter C-terminal domain 551 628 IPR053952 -
HCH3g0501 830 NCBIfam potassium uptake protein 53 829 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH3g0501 830 Pfam K+ potassium transporter integral membrane domain 53 538 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0501 HCH-Chr3:3243838 HCH4g0007 HCH-Chr4:70784 1.10E-188 dispersed
HCH3g0501 HCH-Chr3:3243838 HCH3g0502 HCH-Chr3:3250351 0.00E+00 tandem
HCH3g0501 HCH-Chr3:3243838 HCH9g0012 HCH-Chr9:101601 1.50E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0501 K03549 - csv:101217671 1241.1