Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0502 ATGACTTCGAGAGTTGAAATCGATGAGGACTCCGAAACGAGGGGAAGTATGTGGGTTCTAGACCAGAAGCTTGATCAGCCTATGGATGAGGAGGCCGGGAGGCTCAGCAATATGTATACAGAAAAGAAATTCTCGGTGTTGTTGCTTCTTCGGCTTGCATACCAAAGCCTTGGAGTGGTTTATGGAGATTTGGGGACTTCTCCCTTGTACGTTTTTTATAATATATTTCCTCATGGAATTTCTGATCCGGAGGATGTAGTAGGAGCACTTTCATTGATTATATACTCTCTCACTCTTGTTCCACTCATCAAGTATGTATTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTCTACTCGTTGCTATGTCGTCATGCGAAAGTAAAAACTATTCCAAACCAACACCGAACTGATGAGGAGCTAACCACATATAGTCGCTCTAAATTTCATGAACAATCATTTGCTGCTAAAGCAAAAGGATGGCTCGAAAGACGATCATCCAGGAAAAATGCGCTGCTTATTCTTGTCCTAGTTGGCACTTCTATGGTTGTTGGAGATGGAATTCTCACTCCTGCTATATCAGTTCTATCAGCTGCAGGAGGGATCAAAGTAAACCACCCCCATGTGAGCAATGATGTAGTTGTGCTTGTTGCTGTTGTAATACTAGTAGGATTATTCAGCTTGCAACGCTATGGTACTGATAGAGTTGGTTGGCTCTTTGCTCCAATTATTCTACTTTGGTTTCTTTTAATTGGAGGTATAGGCATCTACAACATCTTGAAATATGATAAAAGCATTCTAAGAGCCTTTTCACCAGTGTATATATATCGCTATTTTAGAAAGCGAAGGAGTGATGGTTGGACCTCTCTTGGAGGTGTTTTGCTAAGTATAACTGGGACAGAGGCTCTTTTTGCTGATCTGGCTCATTTTCGTGTAGCGGCTGTTCAGATTGCTTTTACTGTACTTGTTTTCCCTTGCCTTCTTTTCGCATATTCTGGACAGGCTGCCTACCTTACGAGCAATAAAGAGCATGTGGTTGATGCCTTTTATCGTTCAATCCCAGATAGCATATATTGGCCGGTGTTTATTATTGCAACTGCTGCTGCTATAGTTGCTAGTCAGGCCACCATATCTGCCACATTTTCAATAATCAAGCAGGCCCTAGCACATGGCTGCTTTCCGAGAGTTAAAGTTGTCCATACATCAAAGAACTTTCTTGGTCAGATATACGTTCCAGATATTAACTGGGTCCTCATGATTCTTTGCATTGCTGTAACAGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCAGTGGTGATAGTCATGCTTGTAACCACATTGCTTATGATTTTAATTATGATTTTAGTGTGGCGCTGTCATTGGACCCTCGCCCTGGTTTTCACTGGCTTATCGCTTATAGTGGAGTGCAGTTACTTTTCTGCTGTTCTCTTCAAGGTTGATCAAGGTGGGTGGGTCCCCCTTGTGATTGCTGGAGTCTTCCTTATCATCATGTATGTGTGGCATTATGGTACTGTTAAGCGATATGAATTTGAACTTCACAGTAAAGTTTCAATGGCATGGATTCTTGGACTTGGTCCCAGCCTAGGATTAGTCCGTGTTCCTGGAATCGGGCTTGTGTATACAGAGTTAGCTAGCGGTGTGCCTCACATATTTTCCCACTTCATTACAAATCTCCCTGCCATACATTCTGTTGTTGTGTTTGTTTGTGTAAAATACCTTCCAGTCTACACCGTGCCAGAGGAAGAGAGGTTCCTGGTAAAACGGATTGGACCCAAGAATTTTCATATGTTTCGTTGTGTTGCAAGATATGGTTATCGAGACCTTCACAAAAAGGATGATGATTTTGAGAAGAAGCTTTTCGATAGCATCTTCCTATTCGTCAGGCTCGAATCCATGATGGAAGGATGTTCAGACTCTGATGAATACAGTTTATATGGCCAGCAAACCGAGCATTCAAGAGATGGCCTGTTGATTGCCAACCATGGCCATACAACTTCATCCATCGCGGACACTACCTTCTCATCAGTGGACTCAATCGTGCCAGCTAAATCTCCGGGGTGTTCAAATAACACGATGAGATTATCTGAGCAAGCAAGCAACCAGACCGATATCGATGAGATAGAATTCTTAACTAGATGTCGGGATGCCGGGGTGGTACACATACTGGGGAACACTGTAATTAGGGCAGGAAGGGAATCAAAGTTTTACAAGAAGATAGCTGTTGATTACATATATGCATTCCTTAGAAAGATATGCAGAGAGAACAGTGTGATTTTCAATGTTCCTCATGAGAGTCTTTTGAATGTTGGACAAATTTTCTATGTATAA 2379 41.95 MTSRVEIDEDSETRGSMWVLDQKLDQPMDEEAGRLSNMYTEKKFSVLLLLRLAYQSLGVVYGDLGTSPLYVFYNIFPHGISDPEDVVGALSLIIYSLTLVPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEELTTYSRSKFHEQSFAAKAKGWLERRSSRKNALLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNHPHVSNDVVVLVAVVILVGLFSLQRYGTDRVGWLFAPIILLWFLLIGGIGIYNILKYDKSILRAFSPVYIYRYFRKRRSDGWTSLGGVLLSITGTEALFADLAHFRVAAVQIAFTVLVFPCLLFAYSGQAAYLTSNKEHVVDAFYRSIPDSIYWPVFIIATAAAIVASQATISATFSIIKQALAHGCFPRVKVVHTSKNFLGQIYVPDINWVLMILCIAVTAGFKNQSQIGNAYGTAVVIVMLVTTLLMILIMILVWRCHWTLALVFTGLSLIVECSYFSAVLFKVDQGGWVPLVIAGVFLIIMYVWHYGTVKRYEFELHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYRDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTEHSRDGLLIANHGHTTSSIADTTFSSVDSIVPAKSPGCSNNTMRLSEQASNQTDIDEIEFLTRCRDAGVVHILGNTVIRAGRESKFYKKIAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3250351 3256800 - evm.model.ptg000005l.1015 HCH3g0502 541230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0502 792 Pfam K+ potassium transporter C-terminal domain 551 789 IPR053952 -
HCH3g0502 792 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 45 791 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH3g0502 792 Pfam K+ potassium transporter integral membrane domain 52 538 IPR053951 -
HCH3g0502 792 NCBIfam potassium uptake protein 52 791 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0502 HCH-Chr3:3250351 HCH9g0012 HCH-Chr9:101601 7.60E-211 dispersed
HCH3g0501 HCH-Chr3:3243838 HCH3g0502 HCH-Chr3:3250351 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0502 K03549 - csv:101217915 1415.21