Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0520 ATGGCATCCACAGCCCAACTTCTATGCCTTCTTTGCGTTCTTTCATGCATCAGTTCATCGCTTCAAGATTACTATATCCCAGAAAAGAAGAACATGAACATCATCGATTCTTGTTGGAGGACAAAGCCCAATTGGGCAGCTAACCGCCAGGCCTTGGCTGATTGTGCTGTCGGCTTCGGCAAGGATGCTATCGGTGGAAAATTCGGTGCCATCTACGTCGTCACTGACCCATCTGATAACCCTGCCGATCCCAAACCAGGGACATTACGTTATGGTGTCATCCAGGCAAAGCCATTGTGGGTTGTTTTTGCTAAAGACATGGTGATTGTTCTTAAGAATGAGTTGATGATAAACAGCTACAAGACTATTGATGGCCGAGGTGTGAAAGTGGATATTGCGTACGGGCCATGCATTACGGTGCAAGGAGTGAGCCATGTAATTATTCATGGAATCAGTATCCATGATTGTAAACCTGGAAAAGCTGGCCTTGTTCGGGACACTGTCACACATGTCGGTCATCGTCAAGGCTCCGATGGCGATGCAATTTCGATATTTTCTTCTTCGTTTGTTTGGATTGATCACTGCTTTTTAGCTCGCTCCACTGATGGCCTTGTTGATGTGATCCATGCTTCGACTGCAGTCACTGTTTCTAACTGCTACTTCTCGCAGCATGATAAAGTGATGCTGCTTGGACATAATGACGGGTTTACTGCTGATAAAATTATGAAAGTAACTGTAGTCTACAACCGTTTTGGTGCTGGCCTTATCGAAAGAATGCCAAGGGTTAGATTCGGATATGCCCATGTTGCCAACAATAGATACGATGAGTGGAAGATGTATGCCATTGGTGGAAGTGCAAATCCCACAATCTTTAGTGAAGGAAACTACTTCGTAGCTCCCTATAATTCCAACTCTAAACAGGTTACCAAAAGGGAGGTTAATAATGGCTGGAAGGACTGGAAGTGGAGATCCTCAAGAGATGTTTTCATGAACGGTGCTTATTTTGTGCAATCTGGGTGGGGAAGTTGCAGTCCAGTTTACACAAGGGCTCAGTCTTTTCCGGTGGCTCCGGGCTCCATGGTTCCGGCTTTGACTGTAAATGCAGGGCCCTTGCGTTGTTTTGTTGGGAAAGCTTGCTGA 1140 45.7 MASTAQLLCLLCVLSCISSSLQDYYIPEKKNMNIIDSCWRTKPNWAANRQALADCAVGFGKDAIGGKFGAIYVVTDPSDNPADPKPGTLRYGVIQAKPLWVVFAKDMVIVLKNELMINSYKTIDGRGVKVDIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVTHVGHRQGSDGDAISIFSSSFVWIDHCFLARSTDGLVDVIHASTAVTVSNCYFSQHDKVMLLGHNDGFTADKIMKVTVVYNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPYNSNSKQVTKREVNNGWKDWKWRSSRDVFMNGAYFVQSGWGSCSPVYTRAQSFPVAPGSMVPALTVNAGPLRCFVGKAC 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3431045 3432686 + evm.model.ptg000005l.997 HCH3g0520 541248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
HCH3g0520 379 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
HCH3g0520 379 SUPERFAMILY Pectin lyase-like 32 370 IPR011050 -
HCH3g0520 379 Gene3D - 32 372 IPR012334 -
HCH3g0520 379 PANTHER PECTATE LYASE 18-RELATED 28 376 IPR045032 GO:0030570(InterPro)
HCH3g0520 379 Pfam Pectate lyase 113 297 IPR002022 -
HCH3g0520 379 SMART amb_all 106 303 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0032 HCH-Chr3:232911 HCH3g0520 HCH-Chr3:3431045 3.80E-83 dispersed
HCH3g0520 HCH-Chr3:3431045 HCH4g0072 HCH-Chr4:395562 4.30E-119 dispersed
HCH14g0796 HCH-Chr14:35985595 HCH3g0520 HCH-Chr3:3431045 3.50E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0520 K01728 - csv:101211379 673.7