Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0537 ATGAGTTCCAAGACACTGTTTTTCTTCATCTTACTTTCCATTTTAGCTTCTTCTTTCCATTCTTCATCTGCAGAAAATGAAGAAGACCCAGGTCTTGTTATGAACTTTTACAAGGATTCATGTCCTCAAGCGGAAGATATCATCAAAGAACAAGTCAAGCTTCTCTATAAACGCCATAAGAACACTGCATTTTCATGGCTCAGAAACATCTTCCATGATTGTGCTGTTCAGTCTTGTGATGCCTCACTGCTGTTGGATTCAACAAGAAGGAGCTTGTCTGAAAAAGAAACAGACAGAAGCTTTGGACTGAGGAATTTTAGGTACATTGAGACCATAAAAGAAGCAGTGGAGAGGGAGTGTCCTGGTGTTGTTTCCTGCTCAGACATCCTTGTTTTGTCAGCCAGAGATGGCATTGTTTCTCTTGGAGGGCCTTATATCCCACTTAAGACAGGCAGAAGGGATGGGAGGAAGAGCAGGGCTGCTATGTTGGAGGAGTATCTTCCAGACCATAATGAAAGCATTTCTGTTGTCCTTGACAGATTTGGAGCCATGGGAATTGACACCCCGGGTGTGGTCGCCTTGCTAGGATCTCACAGTGTTGGACGAACACACTGTGTGAAGCTGGTGCACCGCTTATACCCAGAGGTAGATCCAGTTCTGAATCCAAGCCATGTTGAGCACATGCTCCACAAGTGTCCAGACCAAATCCCAGATCCCAAGGCAGTGCAATACGTGAGAAACGACCGTGGCACGCCCATGGTTTTGGACAACAACTACTACAGAAACATACTTGACAACAAAGGGTTGCTGATAGTAGACCACTTGCTGGCCACAGACAAGAGAACAAAGCCATATGTGAAGAAAATGGCTAAAAAACAAGACTACTTCTTCAAGGAATTCTCCAGAGCCATCACCATTCTCTCTGAGAACAACCCTCTCACTGGCACCAAGGGTGAGATCAGAAAGCAGTGCAATCTTGCAAACAAGCAGCACTAG 996 45.08 MSSKTLFFFILLSILASSFHSSSAENEEDPGLVMNFYKDSCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRSLSEKETDRSFGLRNFRYIETIKEAVERECPGVVSCSDILVLSARDGIVSLGGPYIPLKTGRRDGRKSRAAMLEEYLPDHNESISVVLDRFGAMGIDTPGVVALLGSHSVGRTHCVKLVHRLYPEVDPVLNPSHVEHMLHKCPDQIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLIVDHLLATDKRTKPYVKKMAKKQDYFFKEFSRAITILSENNPLTGTKGEIRKQCNLANKQH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3544201 3546027 + evm.model.ptg000005l.980 HCH3g0537 541265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0537 331 ProSiteProfiles Plant heme peroxidase family profile. 31 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 CDD secretory_peroxidase 31 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH3g0537 331 Gene3D - 35 328 - -
HCH3g0537 331 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 SUPERFAMILY Heme-dependent peroxidases 32 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 Pfam Peroxidase 49 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PANTHER - 12 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 FunFam Peroxidase 35 177 - -
HCH3g0537 331 FunFam Peroxidase 168 307 - -
HCH3g0537 331 Gene3D Peroxidase, domain 2 168 307 - -
HCH3g0537 331 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0537 331 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0270 HCH-Chr11:2451724 HCH3g0537 HCH-Chr3:3544201 2.00E-101 dispersed
HCH3g0537 HCH-Chr3:3544201 HCH14g0610 HCH-Chr14:34853882 1.40E-52 dispersed
HCH3g0537 HCH-Chr3:3544201 HCH9g0600 HCH-Chr9:4028422 5.40E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0537 K00430 - csv:101214168 595.504