Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0555 ATGTATGAGCCACACGATTTCGAGGATGATCATGATCTACTACTGGAAATGACTCACAAAAACTTCGAAAGTGAACTAGAAAAGTTTGGAGAAGATGATTTCGAGAGCAAATCAGTGACAGAAACCATGGAATTAGCTCCTTCACTACTAGACGACCCATTAACCGATCAAAACCAACGCTCTAAAAGGAAGCGTTACCATCGCCATACTCAGCTCCAAATCCAGGAAATGGAAACGTTCTTTAAGGAATGTCCTCATCCTGATGATAAGCAAAGAAAGCAGCTGAGCCGTGAGCTAGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAACGAACACAAATGAAGGCTCAACATGAACGCCATGAAAATGCAATTTTGAAAGCTCAGAATGAGAAACTGAGAGCAGAAAATCTCAGATATAAGGAAGCTCTTAGCAATACAACTTGCCCTAATTGTGGAGGCCCTGCTGCTCTTGGTGAAATGTCTTTTGATGGCCAACATTTGAGAATTGATAATTCTCATTTAAGAGAGGAGATCGAGAGATTAAACACAGTTGCTACCAAATATGGTGGAAAACCATGGTCTTCCTATTCTCATCATGTTCCTTCTAGATCCCTTGATCTTGCAACTGGAAGTTTAAAGCAACAACCAGACTTCTTAGGGGAAATATATGGTGTTGGAGACCACCTTATAAAATCTGTCACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCAATGGAAGAACTTTATAGAATGTCTCAAACAGGAGAACCCTTGTGGATTCCTGGAGAAAACTCCATGGAAAGGTTGAATGAGGAGGAATATTTAAGGACTTACTCAAGGGGTATTGGTCCTAGAATTATAGGCCTAAGTTCTGAAGCTTCAAGGGAATCTTTAATTGTGGCTTTGAATCATCTTAAAGTTGTTGATATTCTTTTGGATGTGAATCAGTGGTCAACTATTTTCTGTGGGATTGTTTCAAGAGCATTGACCCTTGAAGTTTTATCAACTGGAGTGGCTGGGAACTATAATGGAGCTATGCAAGTGATGACAGCTGAGTTCCAAGTTCCTTCACCTCTTGTCCCAACTAGAGAAAATTACTTCGTGAGGTATTGCAAGCAGCACGCCGACGGGACTTGGGCGGTCGTCGATGTATCGCTTGATTATCTACGCCCCACTCCCATTTCAAGGACTCGTAGAAGACCCTCTGGTTGTTTAGTCCAAGAATTACCAAATGGTTACTCAAAGATTATATGGGTGGAACATGTTGAAGTGGATGATCGAGCAGTTCATAACTTGTACAAAAGATTGGTCACTTCTGGCCTTGCTTTTGGAGCCAAACGATGGATCGCTACTTTGGATCGACATTGCGAGCGCCTAGCTAATTCATTAGCTATCAATTCTTCTGCAGCAGATCTTTGTGTAATAACTGGCCCGGAGGGGAGAAAGAGCATCATGAAGCTGGCAGAGAGGATGGTGACGAGCTTTTGCAGTGGCGTCGGCGCTTCGACGGCTCATAACTGGACAACTTTATCAGCCATTGGTTCTGATGATGTTAGGGTAATGGCAAGGAAGAGCCTGGATGATCCTGGCCGCCCTCCTGGAATCGTTCTAAATGCTGCAACTTCTTTCTGGATACCTATCCCTCCAAATAGGGTATTTGATTTTCTTCGAGATCAAAAATCCCGAAGTCAGTGGGATATACTTTCAAACGGTGGTTTAGTCCAAGAAATAGCTCGTATCGGCAACGATCAAAACTTGGGAAATTGCGTCTCGTTACTTCGAGTTAATAGCGCAAATTCAAGCCAAAGCAACATGGTGATATTACAAGAGAGCAGCAGCGACGGCACCGGCTGCTACGTAATATACGCGCCGGTAGACGTCATCGCCATGAATATGGTATTGAGCGGCGGCGACCCAGATTACGTAGCTCTCTTACCATCAGGCTTTGCCATACTTCCTGATGGGCCCGAGCCCAATGGAGCAGGAGGAGGAGGAGGAGTTCTTGAGTTCGGGTCAGGCGGGTCGTTATTAACAGTGGCATTTCAGATATTAGTAGATTCAATCCCAACGGCAAAACTATCATTGGGATCAGTGGCCACGGTGAATAGTCTTATAAAATGCACTGTTGAAAGGATTAGAGCTGCAGTGATGTGTGAGAATCCATAA 2193 43.59 MYEPHDFEDDHDLLLEMTHKNFESELEKFGEDDFESKSVTETMELAPSLLDDPLTDQNQRSKRKRYHRHTQLQIQEMETFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAQNEKLRAENLRYKEALSNTTCPNCGGPAALGEMSFDGQHLRIDNSHLREEIERLNTVATKYGGKPWSSYSHHVPSRSLDLATGSLKQQPDFLGEIYGVGDHLIKSVTTEIDKPVIVELAVSAMEELYRMSQTGEPLWIPGENSMERLNEEEYLRTYSRGIGPRIIGLSSEASRESLIVALNHLKVVDILLDVNQWSTIFCGIVSRALTLEVLSTGVAGNYNGAMQVMTAEFQVPSPLVPTRENYFVRYCKQHADGTWAVVDVSLDYLRPTPISRTRRRPSGCLVQELPNGYSKIIWVEHVEVDDRAVHNLYKRLVTSGLAFGAKRWIATLDRHCERLANSLAINSSAADLCVITGPEGRKSIMKLAERMVTSFCSGVGASTAHNWTTLSAIGSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFDFLRDQKSRSQWDILSNGGLVQEIARIGNDQNLGNCVSLLRVNSANSSQSNMVILQESSSDGTGCYVIYAPVDVIAMNMVLSGGDPDYVALLPSGFAILPDGPEPNGAGGGGGVLEFGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNSLIKCTVERIRAAVMCENP 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3697787 3702760 - evm.model.ptg000005l.962 HCH3g0555 541283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0555 730 Pfam START domain 249 467 IPR002913 GO:0008289(InterPro)
HCH3g0555 730 Pfam Homeodomain 63 118 IPR001356 GO:0003677(InterPro)
HCH3g0555 730 FunFam Homeobox-leucine zipper protein HDG1 51 136 - -
HCH3g0555 730 SUPERFAMILY Bet v1-like 487 722 - -
HCH3g0555 730 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH3g0555 730 CDD START_ArGLABRA2_like 243 466 - -
HCH3g0555 730 CDD homeodomain 62 121 IPR001356 GO:0003677(InterPro)
HCH3g0555 730 SUPERFAMILY Bet v1-like 239 469 - -
HCH3g0555 730 Gene3D - 314 467 IPR023393 -
HCH3g0555 730 Coils Coil 114 149 - -
HCH3g0555 730 SUPERFAMILY Homeodomain-like 49 120 IPR009057 -
HCH3g0555 730 Gene3D - 50 136 - -
HCH3g0555 730 FunFam Homeobox-leucine zipper protein GLABRA 2 248 466 - -
HCH3g0555 730 ProSiteProfiles START domain profile. 239 470 IPR002913 GO:0008289(InterPro)
HCH3g0555 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 727 IPR042160 -
HCH3g0555 730 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
HCH3g0555 730 SMART HOX_1 61 124 IPR001356 GO:0003677(InterPro)
HCH3g0555 730 MobiDBLite consensus disorder prediction 44 64 - -
HCH3g0555 730 SMART START_1 248 467 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0555 HCH-Chr3:3697787 HCH7g1594 HCH-Chr7:48243759 1.60E-178 dispersed
HCH14g0831 HCH-Chr14:36215430 HCH3g0555 HCH-Chr3:3697787 4.00E-278 wgd
HCH2g0744 HCH-Chr2:51109525 HCH3g0555 HCH-Chr3:3697787 2.00E-277 wgd
HCH3g0555 HCH-Chr3:3697787 HCH7g0229 HCH-Chr7:1529625 2.50E-277 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33318 PF01852 START 1.90E-48 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0555 K09338 - csv:101212604 1112.44