Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0566 ATGCACAATTATGTTTGGTTTCCCTTCCTCATTTACTTCATTATCATTCGAAATTCTCGAACTTCTTTCGGATATCCTTATCTTTATTGTTACAACACCACATTCACTCAGAACAGCTCCTACCAATCAACCCTAAATCTCCTATTTTCATCTCTTTCCTCCAAAGCTCCCGGAGTAAAAGGATTCCATAACACTTCCCTCAGCCGACCACCGAACGACACCCTTTACGGGCTCTTCCAGTGCCGAGGCGATGTCAGCAACGCCACCTGCCGTAACTGCGTCGCTCAGGCTACCAGAGACGTAGCCATGCAGTACTGTCCTTTCAGAAAATCCGCTGTCATTTGGTATGAGGAATGCCTATTACGCTATTCCGACAGGGTTTTTTCATCGATCGTGGCGACGGAACCCGGTGTGAGATTCTCCCACGCGAAGAATATTGAAGGCGACGTGATTCGATATAACCAACGAGTGATCGCGACGTTGAAAGGGACGGCGGGGAGGGCGGCGAATGGGTCTTCGGAATCGGAGATGGGGGAGATGTTTGCAACGGGAGAGACAAGTTTGACAGAAAATCAAAGGATTTACACGTTGGCGCAGTGTAGTGGAGATTTGTCGAAGACCGATTGTGGAGAATGTTTGAAAGAAGCAATAAAGGGAATTCCAAGTTGTTGCAGTGGAAAACGAGGTGGTCGAGTTTTGTTTCCAAGCTGTTATGTTCGTTATAGTTCTCATCCGTTTTACAACGACTTAACGACCGGTCCGATACCTTCGCCGGTGAACGTGAATTCATCTTCAATTTCAGGGGGAAGAAGGTCAACGAGTGTGATAATAATAGCCATTGTGGCTCCAATTACTGTCTCTATACTGCTTTTTCTTGTGGGCTGTTTTTTCCTGCGCAGAAGAGCGGCAAAGAAGAAATACACTTTTGTTAAGCAAGATAGTGTTGTTAGTGAGATGACCACAGTGGAATCTTTGCAATTTGACTTCAAAACAATTGATGCAGCTACTAATAAGTTCTCACTGGAAAACAAGCTGGGTGAAGGTGGATTTGGTGATGTCTACAAGGGTATACTTGATAATGGACAAGAGATTGCGGTGAAAAGATTATCACGAGGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTTTGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTGAGGCTTTTGGGATTCTGTTTGGAGGGTGAAGAGAAGATTCTCATTTACGAATATATTCCTAACAAAAGCCTCGACTGTTTTCTATATGATCCTGAAAGACAGAGAGAGTTAGATTGGACGAGGCGATATAAGATCATCAACGGGATTGCTAGAGGAATTCTGTATCTACATGAAGATTCTCGACTTCGAATTATTCATCGTGATCTTAAAGCTAGTAACATCTTGTTAGATGGAGATATGAATGCCAAAATCGCAGATTTTGGTATGGCAAGGATTATTCAAGTTGATCAAACTCAAGGAGTTACAAATAGAATAGTTGGTACCTACGGTTATATGTCCCCGGAATATGCAATGCATGGGAACTTCTCAATGAAATCCGATGTCTATAGCTTTGGAGTCTTAGTGTTGGAGATTTTAAGTGGCAAGAAGAACAATACATTTTATCTAACCGATCTGGCCGAAGATCTCTTGACCTACGCTTGGAAATTATGGAAGGAAGGAACACCATTAGAATTATTGGATCTCCTTCTGAGAGATTCATATTCAAGAAACGAGGTCCTAAGATGCATCCATATTGCTTTACTATGTGTTCAAGAGGATCCTGGCCGTAGACCCTCCATGGCTTCCATTGTGCTCACGCTCAATAGCTATTCTGTTACTTTGCCAATACCTGAACAGCCGGCATTCTTCTTGCGCAGTAGAGATAATGGCATGATAATAGGAACAGACAGCGATCAGTCTGCGACTAGGTCGTCTATCTTGTGGTCTGCCAATGAAGCCTCCATAACTGAGTTGTACCCACGTTAA 1995 43.06 MHNYVWFPFLIYFIIIRNSRTSFGYPYLYCYNTTFTQNSSYQSTLNLLFSSLSSKAPGVKGFHNTSLSRPPNDTLYGLFQCRGDVSNATCRNCVAQATRDVAMQYCPFRKSAVIWYEECLLRYSDRVFSSIVATEPGVRFSHAKNIEGDVIRYNQRVIATLKGTAGRAANGSSESEMGEMFATGETSLTENQRIYTLAQCSGDLSKTDCGECLKEAIKGIPSCCSGKRGGRVLFPSCYVRYSSHPFYNDLTTGPIPSPVNVNSSSISGGRRSTSVIIIAIVAPITVSILLFLVGCFFLRRRAAKKKYTFVKQDSVVSEMTTVESLQFDFKTIDAATNKFSLENKLGEGGFGDVYKGILDNGQEIAVKRLSRGSLQGSEEFKNEVLLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDCFLYDPERQRELDWTRRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNAKIADFGMARIIQVDQTQGVTNRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLTDLAEDLLTYAWKLWKEGTPLELLDLLLRDSYSRNEVLRCIHIALLCVQEDPGRRPSMASIVLTLNSYSVTLPIPEQPAFFLRSRDNGMIIGTDSDQSATRSSILWSANEASITELYPR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3778950 3792822 + evm.model.ptg000005l.951 HCH3g0566 541294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0566 664 FunFam Cysteine-rich receptor-like protein kinase 10 300 414 - -
HCH3g0566 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0566 664 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524(InterPro)
HCH3g0566 664 FunFam cysteine-rich receptor-like protein kinase 10 415 617 - -
HCH3g0566 664 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 66 626 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
HCH3g0566 664 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0566 664 SUPERFAMILY Protein kinase-like (PK-like) 324 642 IPR011009 -
HCH3g0566 664 Gene3D Phosphorylase Kinase; domain 1 300 414 - -
HCH3g0566 664 CDD STKc_IRAK 345 611 - -
HCH3g0566 664 SMART serkin_6 339 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0566 664 ProSiteProfiles Gnk2-homologous domain profile. 134 246 IPR002902 -
HCH3g0566 664 FunFam Cysteine-rich receptor-like protein kinase 28 26 127 - -
HCH3g0566 664 Pfam Protein tyrosine and serine/threonine kinase 340 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0566 664 Gene3D Transferase(Phosphotransferase) domain 1 415 617 - -
HCH3g0566 664 FunFam Cysteine-rich receptor-like protein kinase 10 138 246 - -
HCH3g0566 664 Pfam Salt stress response/antifungal 159 243 IPR002902 -
HCH3g0566 664 Pfam Salt stress response/antifungal 30 125 IPR002902 -
HCH3g0566 664 Gene3D - 140 246 IPR038408 -
HCH3g0566 664 Gene3D - 24 128 IPR038408 -
HCH3g0566 664 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0845 HCH-Chr14:36317862 HCH3g0566 HCH-Chr3:3778950 2.10E-129 dispersed
HCH3g0566 HCH-Chr3:3778950 HCH3g0568 HCH-Chr3:3808842 9.40E-247 dispersed
HCH6g1465 HCH-Chr6:48321622 HCH3g0566 HCH-Chr3:3778950 1.40E-16 dispersed
HCH7g1366 HCH-Chr7:46465395 HCH3g0566 HCH-Chr3:3778950 2.70E-20 dispersed
HCH3g0566 HCH-Chr3:3778950 HCH3g0572 HCH-Chr3:3830863 1.90E-20 proximal
HCH3g0566 HCH-Chr3:3778950 HCH3g0567 HCH-Chr3:3802780 1.30E-158 tandem
HCH14g0842 HCH-Chr14:36302300 HCH3g0566 HCH-Chr3:3778950 9.30E-149 wgd
HCH3g0566 HCH-Chr3:3778950 HCH6g0743 HCH-Chr6:41900208 1.30E-110 wgd
HCH3g0566 HCH-Chr3:3778950 HCH7g0217 HCH-Chr7:1473068 1.10E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81390 PF07714 PK_Tyr_Ser-Thr 4.40E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0566 - - - 0.0