Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0568 ATGGTAATTTTTCTTTCTTTCCTCTTGATCCTTACTTCCTCCATCCATGGAAACGCTCAGTTTCTATACCCATACCGCAGTTGCTCTTCGGCCAATTTCACTCCTAACAGCGCCTATCAATCAAGCCTCAATCTTCTCATTTCAAATCTTTCCGCCAACGCCCCAGGAATCAATGGTTTCTATAACATCTCCGTCGGCCAAACACGAAACGACACCGTTTACGGTCTCTTTCAGTGCAACGGAGATCAATCAAACAGCTCCTGCAGAATGCTGGTGGAGCGCGCTGCTAGAGAGATCATAACCCAGCAGTTCTGTCCCTTTAGCAAATCCGCCGTGTTTTGGTACGATGAATGCATGTTACGTTATTCCGACCAGTCATTCTTCTCTGTCGTGTCCAGAGAGCCAAGCGTTCTTTCAAAGAGCCCAATGGATATAGAATCCGACAAGGCTCGCTTTAACGTGCTAGTTTTATCGACGTTGGCTGCCGTTGCGGCCAACGCCTCTTCTAGGGCCGGGGCGGGGGGGAAAATGTTCGCAACGCGGGAGGTGAATTTCACAGAAAATCAACCGCTTTATACACAAGCACAGTGCACCGGCGACTTGTCAAGTGCTGACTGTGGAGAATGCTTAAGAGAGGCAATCAAGGGAATTCCGAATTGCTGTACTGATAAACGAGGAGGGAGAACTTTGCTTCCCAGCTGTTTCGTTCGCTATGAAACCTATTTGTTTTACAACAACACGCCTTCATCTCCGACGACTTCCGTAACCACTTCGAGTACTCCACCACCACCACTTACAGGGAGAACCAGAACATCGAATGTGATGACAAGAATAATAATAGCGGTTGTGGTTCCAATTATTGTCTCTATATTGCTTTTCTTTGTGGGCTGCTACTTCCTGCGCAGAAGAGCAGCAAAGAAGAAATACACTTTTGTTAAGGAAGATAGTGTTGTTAATGAGATGATCACAGAGGAATCATTACAATTTGATTTCAATACAGTTGATGCTGCTACTAATAACTTCTCACTGGAAAATAAGTTGGGTGCTGGTGGATTTGGTGTTGTCTACAAGGGTATACTTGATAGTGGACAAGAGATAGCAGTGAAAAGATTATCAAGAGGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTTTGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTGAGGCTATTGGGATTCTGCTTGGAGGGTCAAGAGAAGATTCTCATCTATGAATATATTCCTAACAAAAGCCTCGACGGTCTCCTATATGATCCTGAGAGAAAGAGAGAGCTGGACTGGATGAGACGATACAAGATCATCAACGGGATTGCTCGAGGAATACTGTACCTACATGAAGATTCTCGACTTCGTATCATTCATCGTGATCTTAAAGCTAGTAACATATTATTAGATGGAGATATGAATGCTAAAATTGCTGATTTTGGTATGGCGAGGATTATCCAAATTGATCAAACTCAAGGAAATACAAGTAGAATTGTTGGTACCTATGGCTATATGTCACCGGAATATGCAATGCACGGTAACTTCTCAATGAAATCCGATGTGTATAGCTTCGGAGTCTTAGTCTTGGAGATCATAAGCGGCAAGAGAAACAATACTTTTTATCTATCAGATCTCGCCGAAGACCTCTTGACATACGCTTGGAAATTATGGAAGAATGGAAGTCATTTAGAATTACTGGATCCAATCCTGAGAGATTCATATTCAAGAAACGAGGTGACAAGATGCATGCATATTGCTTTACTATGTGTGGAGGAGGATCCTGTGAGAAGACCTTCCATGGCTTCGATTGTTTTAATGCTGAATGGCTCTTCTGTTACTTTGCCATCTCCTGAAAAACCAGCATTCTTCTTACGAAGTGAAGATAATGGCATGATTACAGGAACAGATGATAGTGATTATCAGTATGCGAGAAGATCTATATTATTGTCTGCCAATGAAGCATCCATAACTGAATTATCTCCACGATAA 2004 42.51 MVIFLSFLLILTSSIHGNAQFLYPYRSCSSANFTPNSAYQSSLNLLISNLSANAPGINGFYNISVGQTRNDTVYGLFQCNGDQSNSSCRMLVERAAREIITQQFCPFSKSAVFWYDECMLRYSDQSFFSVVSREPSVLSKSPMDIESDKARFNVLVLSTLAAVAANASSRAGAGGKMFATREVNFTENQPLYTQAQCTGDLSSADCGECLREAIKGIPNCCTDKRGGRTLLPSCFVRYETYLFYNNTPSSPTTSVTTSSTPPPPLTGRTRTSNVMTRIIIAVVVPIIVSILLFFVGCYFLRRRAAKKKYTFVKEDSVVNEMITEESLQFDFNTVDAATNNFSLENKLGAGGFGVVYKGILDSGQEIAVKRLSRGSLQGSEEFKNEVLLVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDGLLYDPERKRELDWMRRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNAKIADFGMARIIQIDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEIISGKRNNTFYLSDLAEDLLTYAWKLWKNGSHLELLDPILRDSYSRNEVTRCMHIALLCVEEDPVRRPSMASIVLMLNGSSVTLPSPEKPAFFLRSEDNGMITGTDDSDYQYARRSILLSANEASITELSPR 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3808842 3812419 + evm.model.ptg000005l.949 HCH3g0568 541296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0568 667 FunFam Cysteine-rich receptor-like protein kinase 28 24 126 - -
HCH3g0568 667 ProSiteProfiles Gnk2-homologous domain profile. 133 243 IPR002902 -
HCH3g0568 667 Gene3D - 143 243 IPR038408 -
HCH3g0568 667 Gene3D - 21 127 IPR038408 -
HCH3g0568 667 ProSiteProfiles Gnk2-homologous domain profile. 21 127 IPR002902 -
HCH3g0568 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 69 628 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
HCH3g0568 667 Pfam Salt stress response/antifungal 158 241 IPR002902 -
HCH3g0568 667 Pfam Salt stress response/antifungal 28 125 IPR002902 -
HCH3g0568 667 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
HCH3g0568 667 MobiDBLite consensus disorder prediction 249 268 - -
HCH3g0568 667 CDD STKc_IRAK 347 614 - -
HCH3g0568 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0568 667 Pfam Protein tyrosine and serine/threonine kinase 342 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0568 667 Gene3D Transferase(Phosphotransferase) domain 1 417 619 - -
HCH3g0568 667 FunFam Cysteine-rich receptor-like protein kinase 10 137 243 - -
HCH3g0568 667 FunFam cysteine-rich receptor-like protein kinase 10 417 619 - -
HCH3g0568 667 ProSiteProfiles Protein kinase domain profile. 341 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0568 667 SUPERFAMILY Protein kinase-like (PK-like) 326 638 IPR011009 -
HCH3g0568 667 Gene3D Phosphorylase Kinase; domain 1 302 416 - -
HCH3g0568 667 SMART serkin_6 341 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0568 667 FunFam Cysteine-rich receptor-like protein kinase 10 302 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0566 HCH-Chr3:3778950 HCH3g0568 HCH-Chr3:3808842 9.40E-247 dispersed
HCH3g0568 HCH-Chr3:3808842 HCH3g0571 HCH-Chr3:3827201 7.00E-133 dispersed
HCH3g0567 HCH-Chr3:3802780 HCH3g0568 HCH-Chr3:3808842 1.30E-150 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81392 PF07714 PK_Tyr_Ser-Thr 1.50E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0568 - - - 0.0