Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0586 ATGGATCCTCCTCCTAAATGGCCCTTCTTTCTTCTCTTTTTCCTCTTCACCGCCGCTAACGCTGACCCAGTTCATATCATTAAAGATGGTCAGCTCTTGCTCTCTGATAACAAAAACTTCGCTCTTGGATTCTTTGGATTCGGAAACTCCACCACTAGACGATATGTTGGAATTTGGTATTACAAGATTCCTTATGAATTGACTGTCGTTTGGGTTGCTAATAGAAACACTCCTCTTAACGACACGTCGGGAAATTTCGTCGTTGATAGTTATGGAAACCTCGTTATCTACAGCCCGATGCAGAACATCTCTCTTTGGTCTACGAATGTTTCGACGTCGACGACGAACGACGCGTCGGTTAAGCTTCTGAATACGGGTAATCTTGTCGTGGTTCAACGAGAAAGTCAAAGGATTCTTTGGCAGAGCTTTGACTATCCGTCTCATACGCTGCTTCCTTATATGAAAATTGGGTTGGACCGGAGAACCGGGTTCAGTTGGTTCTTGACTTCTTGGAAGGCTCCTGATGATCCGGGTGATGGGAATTTCACTTGTAGAATTGACCCGACCGGGTACCCGCAGTTCATTCTGTACGATGGGTCCATTCCACGGTGGCGGGCCGGGTCATGGACCGGGCGTAGGTGGACGGGTGTACCCGAGATGACGAGATCGTTCATCATCAACACGTCATACGTCGACAATGCCGACGAGGTTTCCATATCCAACGGTATCACGGTCGATACGGTCTTGATGAGGATGACTCTTGACGAATCGGGTTCCGTACACCGGTCCGCGTGGCACGGACAAGACCGGAAGTGGAATGAATTCTGGTCGGCTCCGACCGAGTGGTGCGACAGCTACAACCGGTGCGGTCAAAACAGTAACTGCGACCCGTATAATGCGGATCTGTACCAATGCACGTGTCTACCCGGATTCGAACCCAAATCGCCACGTGATTGGTTTCTGAGAGAACCTTCGGGAGGGTGTGTAAGAAAGAGGGAAAATGCCACGTGTCGAAATGGAGAAGGGTTTGTGAAGGTAGCACGTGTGAAGCTGCCAGATACGTCAAAGGCACGTGGAGATAAGAGTATGGATTTATATACGTGTGGGCAAGCATGTCTGAAGGATTGTAATTGTACGGCTTACACGAGTGCAAATGAGACAAGTGGAATGGGGTGCATCACGTGGTATGGAGCTTTGTTAGATACGAGGACGTATGCCAGCGTCGGACAAGATTTGTATGTACGAGTTGATGCCATTGAATTAGCTGAATATGCAAAAAATTCAAATCATCATTCAACGAAGAAGAAGGTGGTGGCCACTGTCATTGTATCTGTTGTTGCAATACTTCTACTCGTGGCCTTTCTGGTTTATATCAGGGAAAAGACAAGAAGAAGAAATGATGTGTCTAAAAGCTTATCTTACTTTGGCGACTCTACAAATTCAAAGGAACTTGATGAAAGTAGAACAAGTTCAGATTTACCAGTCTTTGATCTAAATACAATAGCAAAAGCAACAGACAATTTTTCTTTTGATAACAAGCTTGGAGAAGGTGGTTTTGGCTCAGTTTATAAGGGGAAGCTTAAAAGTGGGGAGGAAATTGCTGTGAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGCAGGAGAGTTTAAGAATGAAGTTACATTAATTGCAAAGCTTCAACACAGAAACCTTGTGAGAATTTTAGGATATTGTGTTCAACATGAAGAGAAGATGCTGGTATATGAATATTTACCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTATTGGATTGGCCTAAACGATTAGAAATTATTAATGGAATTGCTCGAGGGATCTTATATCTTCATCAAGACTCAAGATTGAAGATCATCCATCGAGATTTGAAGGCAAGCAATGTTCTATTAGACATTGATTTGAACCCCAAGATTGCAGACTTTGGTATGGCAAGAATATTTGGTCAAGACCAAATACAAGCCAATACAAATCGTATTGTTGGAACTTACGGTTATATGTCGCCCGAATATGCAATGGAAGGACTATTTTCCGTGAAATCCGACGTATATAGCTTCGGTGTTCTGCTGCTGGAGATCATCACAGGCAGAAAGAACAGCAACTACAGTGATGATTGTTCGTACATAAATTTGGTTGGACATGTTTGGGAGCTATGGAAAGTGGAGAAAGCAATGGAAGTAGTAGTGGACTCCATTTTGGACGATCCATCTTCTATAAATGGAATTATGAGATGCATCCAAATTGGGCTATTATGTGTACAAGAAGATGCAACAGATCGCCCAACTATGTCAACAGTAGTTTTCATGTTAGGCAATGAAGGGACTCTTCCTTCTCCAAAGAAACCTGCATTTATATTGAAGAGAAAATACAACAGTGGAGATCCATCAACCAGTACTACTGAAGGAGCCAACTCTGTAAATGATGTAACTATTACCATGTTTGAAGCTCGTTAA 2484 43.44 MDPPPKWPFFLLFFLFTAANADPVHIIKDGQLLLSDNKNFALGFFGFGNSTTRRYVGIWYYKIPYELTVVWVANRNTPLNDTSGNFVVDSYGNLVIYSPMQNISLWSTNVSTSTTNDASVKLLNTGNLVVVQRESQRILWQSFDYPSHTLLPYMKIGLDRRTGFSWFLTSWKAPDDPGDGNFTCRIDPTGYPQFILYDGSIPRWRAGSWTGRRWTGVPEMTRSFIINTSYVDNADEVSISNGITVDTVLMRMTLDESGSVHRSAWHGQDRKWNEFWSAPTEWCDSYNRCGQNSNCDPYNADLYQCTCLPGFEPKSPRDWFLREPSGGCVRKRENATCRNGEGFVKVARVKLPDTSKARGDKSMDLYTCGQACLKDCNCTAYTSANETSGMGCITWYGALLDTRTYASVGQDLYVRVDAIELAEYAKNSNHHSTKKKVVATVIVSVVAILLLVAFLVYIREKTRRRNDVSKSLSYFGDSTNSKELDESRTSSDLPVFDLNTIAKATDNFSFDNKLGEGGFGSVYKGKLKSGEEIAVKRLAKNSGQGAGEFKNEVTLIAKLQHRNLVRILGYCVQHEEKMLVYEYLPNKSLDSFIFDESKRALLDWPKRLEIINGIARGILYLHQDSRLKIIHRDLKASNVLLDIDLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIITGRKNSNYSDDCSYINLVGHVWELWKVEKAMEVVVDSILDDPSSINGIMRCIQIGLLCVQEDATDRPTMSTVVFMLGNEGTLPSPKKPAFILKRKYNSGDPSTSTTEGANSVNDVTITMFEAR 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4014815 4019325 - evm.model.ptg000005l.931 HCH3g0586 541314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0586 827 ProSiteProfiles Bulb-type lectin domain profile. 18 143 IPR001480 -
HCH3g0586 827 SMART ntp_6 338 416 IPR003609 -
HCH3g0586 827 Gene3D Phosphorylase Kinase; domain 1 482 583 - -
HCH3g0586 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0586 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 143 - -
HCH3g0586 827 Pfam S-locus glycoprotein domain 204 315 IPR000858 GO:0048544(InterPro)
HCH3g0586 827 ProSiteProfiles Protein kinase domain profile. 508 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0586 827 Pfam PAN-like domain 337 402 IPR003609 -
HCH3g0586 827 CDD EGF_CA 283 315 - -
HCH3g0586 827 Pfam D-mannose binding lectin 68 172 IPR001480 -
HCH3g0586 827 PIRSF SRK 6 827 IPR024171 GO:0004674(InterPro)
HCH3g0586 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 583 - -
HCH3g0586 827 ProSiteProfiles EGF-like domain profile. 279 317 IPR000742 -
HCH3g0586 827 CDD B_lectin 24 146 IPR001480 -
HCH3g0586 827 Gene3D Transferase(Phosphotransferase) domain 1 584 786 - -
HCH3g0586 827 CDD PAN_AP_plant 338 416 - -
HCH3g0586 827 ProSitePatterns Protein kinases ATP-binding region signature. 514 536 IPR017441 GO:0005524(InterPro)
HCH3g0586 827 CDD STKc_IRAK 514 780 - -
HCH3g0586 827 Gene3D Laminin 283 333 - -
HCH3g0586 827 SMART serkin_6 508 756 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0586 827 ProSiteProfiles PAN/Apple domain profile. 337 417 IPR003609 -
HCH3g0586 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 792 - -
HCH3g0586 827 SMART blect_4 24 146 IPR001480 -
HCH3g0586 827 Pfam Protein tyrosine and serine/threonine kinase 509 777 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0586 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 788 - -
HCH3g0586 827 Gene3D - 20 143 IPR036426 -
HCH3g0586 827 SUPERFAMILY Protein kinase-like (PK-like) 484 780 IPR011009 -
HCH3g0586 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 177 IPR036426 -
HCH3g0586 827 Pfam Domain of unknown function (DUF3403) 782 827 IPR021820 GO:0004674(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0586 HCH-Chr3:4014815 HCH3g0589 HCH-Chr3:4041713 0.00E+00 dispersed
HCH3g0586 HCH-Chr3:4014815 HCH3g0587 HCH-Chr3:4021609 0.00E+00 tandem
HCH14g0858 HCH-Chr14:36383985 HCH3g0586 HCH-Chr3:4014815 1.90E-170 wgd
HCH3g0586 HCH-Chr3:4014815 HCH6g0716 HCH-Chr6:40611922 1.60E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81394 PF07714 PK_Tyr_Ser-Thr 5.60E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0586 - - - 0.0