Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0587 ATGGATCTTGCTAAATGGCCCTTTTCCATTCCTTTACTTCTCCTTATTTTCCTCGGCCACCACTCTACCGTCGCCGACCAGAATCCAACCGTTGACGTAGACACGATTCACATAATCAAAGATGGTCAGATTTTGGTCTCTGATAACAACAACTTCGCTCTTGGGTTTTTCGGCTTTGGAAATGGAAACTCTAGCACTAGACGATACGTCGGAATTTGGTATAACAAGATTCCTGATTTACCTGTTGTTTGGGTAGCAAACAGAAACACTCCTCTAAACGACAAGTCGGGAAATTTCGTCATCGATCGCCATGGAAGCCTCGTTATCTACAGCCTCATGCAAAACATCTCTCTTTGGTCGACAAATGTTTCGGTTTCTACGAAGAATGATGATAGTAATATGTCGGTTAAGCTTCTGGATACGGGGAATCTTGTCGTGGTTCAACGAGAAAACCAGAAGATTCTATGGCAGAGCTTTGATTATCCATCCAATACCTTGCTTCCTTATATGAAACTTGGGTTTAATCGTAGAACCGGGTTCAGTTGGTTCTTGACTTCTTGGAAGGCTCTTGATGATCCGGGTGATGGGAATTTCACTTGTAGAATGAACCCGGCCGGGTTCCCGCAGTTGATATTGTATGAAGGTTCTGTTCCAAAGTATCGGGTCGGGTCTTGGACCGGGAAGAGATGGTCGGGTGTATCCGAGATGACTCGGACATATATCTTAAACACGTCATTTGTTGACGATTCCGACGAAGTCTCCGTAATGAACGGTGTCACGATGGATGATGTCTTAACGAGGATGAATTTGGACGAATCGGGTCTCGTACATCGATCCACGTGGCTTGATCGAGAACGTGGATGGAATGAGTTTTGGAAGGCTCCGACTGAGTGGTGCGATGGCTACAACCGGTGCGGCCCGAATAGCAACTGCGACCCGTATAACGCGGATCAGTATTTGTGCACGTGCCTGCCGGGGTTTGAGCCGAAATCGCAACGTGACTGGCTCCTGAAAGAGCCGTCGGGGGGGTGTATAAGGAAGAGAGAAAACGCCACGTGTCGAAGTGGGGAGGGGTTTGTGGTGGTAGCACGTGTGAAAGTACCGGACACGTCAGAGGCACGTGTGGACAAGAACATGAGTTTGGAAGCATGTGGGCAAGCTTGTTTGAAGGACTGTAATTGTACGGCTTACACGAGCGCAGATGAAACAACGGGGATTGGATGTGTGACATGGTACGGTGATCATTTGGTGGATACTCGCACGTTCGCTAATGCTAGCTTTGGACAAGATCTGTACGTGCGAGTTGATGCCATTGAATTAGCTGCATATGCTAAAAAATCAAAGCATCATTCAACAAAGAAGAAGATGGTGGCAGCGATTATTTTTGTCTCTGTTGTTGCACTACTTCTGCTTGTGGCTTCTCTGGTTTATATCAGGAAAAAGGCAAGAAAAAGAAAGGAGAGATATAGAAGCTTGTCTTACTTGGGGGAATCTAGAAATTCAAAGGAACTTGATGAAAGTAAAAGGAATTCAGATCTGCCAGTCTTTGATCTTAATACCATAGCGAATGCAACAGACCATTTTTCTTCTTATAACAAGCTTGGAGAAGGTGGATTTGGAACAGTTTATAAGGGGAAGCTTAAAAGTGGGGTGGAAATTGCTGTGAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTGGGAGAGTTTAAGAATGAAGTTACATTGATTGCAAAGCTTCAACACAGAAACCTTGTCAGAATTTTCGGATATTGTGTTCAACATGAAGAGAAGATGCTGGTATATGAATATTTACCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTATTAGATTGGACTAAACGGTTAGAAATTATTAATGGAATTGCTCGAGGGATCTTATATCTTCATCAAGACTCGAGATTAAAAATCATCCATCGGGATTTGAAGGCAAGCAATGTTCTATTAGATATTGATTTAAACCCCAAGATTGCTGATTTTGGTATGGCAAGAATTTTTGGTCAAGACCAAATTCAAGCAAGTACAAATCGTATTGTTGGAACTTACGGTTATATGTCACCGGAATATGCAATGGAAGGACTATTTTCAGTTAAATCCGACGTATATAGCTTCGGTGTTTTGCTACTAGAGATCATCACAGGCAGAAAGAATGGCAACTTCAGTGATGATTCTTCCTACTTAAGTTTGGTTGGACAAGTTTGGGAGCTATGGAGACAGGAAAAAGTAATGGAAGTTGTAGACTCAACTTTGGATGATCCATCTTCTGTGAATGCTATTATGAGATGCGTCCAAATTGGGCTATTGTGTGTGCAAGAAGATGCAACCGATCGCCCGACTATGGCGACGATCGTCTTCTTGTTAGGCAATGAAGTGACTGTTCCTTCTCCAAAGAAACCTGCATTTATCTTGAAGAGAAAATACTCCATTGGAGATCCATCAAGCAGTACTGACGGAGCCAACTCTATAAATAATGTAACTATTACCATGTTTGAAGCTCGTTAA 2538 43.1 MDLAKWPFSIPLLLLIFLGHHSTVADQNPTVDVDTIHIIKDGQILVSDNNNFALGFFGFGNGNSSTRRYVGIWYNKIPDLPVVWVANRNTPLNDKSGNFVIDRHGSLVIYSLMQNISLWSTNVSVSTKNDDSNMSVKLLDTGNLVVVQRENQKILWQSFDYPSNTLLPYMKLGFNRRTGFSWFLTSWKALDDPGDGNFTCRMNPAGFPQLILYEGSVPKYRVGSWTGKRWSGVSEMTRTYILNTSFVDDSDEVSVMNGVTMDDVLTRMNLDESGLVHRSTWLDRERGWNEFWKAPTEWCDGYNRCGPNSNCDPYNADQYLCTCLPGFEPKSQRDWLLKEPSGGCIRKRENATCRSGEGFVVVARVKVPDTSEARVDKNMSLEACGQACLKDCNCTAYTSADETTGIGCVTWYGDHLVDTRTFANASFGQDLYVRVDAIELAAYAKKSKHHSTKKKMVAAIIFVSVVALLLLVASLVYIRKKARKRKERYRSLSYLGESRNSKELDESKRNSDLPVFDLNTIANATDHFSSYNKLGEGGFGTVYKGKLKSGVEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRIFGYCVQHEEKMLVYEYLPNKSLDSFIFDESKRALLDWTKRLEIINGIARGILYLHQDSRLKIIHRDLKASNVLLDIDLNPKIADFGMARIFGQDQIQASTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIITGRKNGNFSDDSSYLSLVGQVWELWRQEKVMEVVDSTLDDPSSVNAIMRCVQIGLLCVQEDATDRPTMATIVFLLGNEVTVPSPKKPAFILKRKYSIGDPSSSTDGANSINNVTITMFEAR 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4021609 4025115 - evm.model.ptg000005l.930 HCH3g0587 541315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0587 845 CDD STKc_IRAK 534 796 - -
HCH3g0587 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
HCH3g0587 845 Gene3D Phosphorylase Kinase; domain 1 502 603 - -
HCH3g0587 845 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524(InterPro)
HCH3g0587 845 SMART serkin_6 528 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0587 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 193 IPR036426 -
HCH3g0587 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 812 - -
HCH3g0587 845 ProSiteProfiles Bulb-type lectin domain profile. 30 159 IPR001480 -
HCH3g0587 845 Pfam S-locus glycoprotein domain 220 331 IPR000858 GO:0048544(InterPro)
HCH3g0587 845 Gene3D - 33 159 IPR036426 -
HCH3g0587 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 159 - -
HCH3g0587 845 Pfam Protein tyrosine and serine/threonine kinase 531 796 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0587 845 Gene3D Laminin 299 349 - -
HCH3g0587 845 PIRSF SRK 2 845 IPR024171 GO:0004674(InterPro)
HCH3g0587 845 ProSiteProfiles PAN/Apple domain profile. 353 436 IPR003609 -
HCH3g0587 845 SMART blect_4 36 162 IPR001480 -
HCH3g0587 845 CDD PAN_AP_plant 352 435 - -
HCH3g0587 845 SUPERFAMILY Protein kinase-like (PK-like) 511 815 IPR011009 -
HCH3g0587 845 SMART ntp_6 354 435 IPR003609 -
HCH3g0587 845 Pfam PAN-like domain 353 414 IPR003609 -
HCH3g0587 845 Pfam D-mannose binding lectin 82 188 IPR001480 -
HCH3g0587 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0587 845 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
HCH3g0587 845 ProSiteProfiles Protein kinase domain profile. 528 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0587 845 CDD B_lectin 38 162 IPR001480 -
HCH3g0587 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 494 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0587 HCH-Chr3:4021609 HCH3g0589 HCH-Chr3:4041713 0.00E+00 dispersed
HCH3g0586 HCH-Chr3:4014815 HCH3g0587 HCH-Chr3:4021609 0.00E+00 tandem
HCH3g0587 HCH-Chr3:4021609 HCH3g0588 HCH-Chr3:4026380 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81395 PF07714 PK_Tyr_Ser-Thr 2.30E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0587 - - - 0.0