Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0588 ATGAATCCAGCGAAATGGATCTTCTACATTCAATTATTTCTGCTTATTTTAATTGGCCATCACCTCCCCTTGAGGGCGAGCCTCGCCATAGAGACTTCAAATTCTACGGCCACTATTCAAATAATCAAGGACGGAGAATTCTTGGAATCCAACAACAAAAACTTCGCTCTCGGATTTTTCAGCCTCACCAACTCTTCCACTACTCGCCGATATCTCGGAATTCGGTACAACGATATTCCTGATCTAACCCTCGTCTGGGTTGCTAACAGAAACAAACCTCTCTCCGACAATTCTGGAACCTTCGCTATAGACAGCCATGGAAACATCGTTATATACACCATCACTCAAAACATCTCTCTTTGGTCCACAAACGTTTCCATTCCGTCGACGAACGACGTGTCGGTTCAGCTTTTGAACACTGGAAATCTTGTAGTAATTCATACACAAAGCCAAGAGATTCTTTGGCAAAGCTTTGATTATCCTTCTAATACCCTTCTTCCATATAACAAACTTGGGTTCGACCGGAGAACCGGGTTCAGCTGGTTCTTGACTTCTTGGAAAGCTCCAGATGATCCGGGCGAAGGAAATTTCACTCTCAGAATTGACCCGAGCGGGTTTCCACAGTTGGTTTTGTATGAAAATAATTTATCACTGTGGCGGGCCGGGACTTGGACCGGGCGTGGATACAGTGGCGTTCCGGAGATGGCGGCCCCGCCTCCGTTTATCATTAACGTTACGTATGTTGATGACGCGGACGAGGTTTATTTTACAAACGGGATCGAAGTGGATAACGTTTTGGTGAGGTTGAGTATGGATGAAACGGGTTTTTTACGGCGAACGTGGCGGCGGGAAAAAGATCGGAAGTGGATTGAATTTTGGTCGGGTCCGACCGAGTGGTGCGACAACTATAACCGGTGTGGTCCAAATAGTAATTGCGACCAGTATAACACGGGTCAACCCCAGTGTGGTTGTTTACCCGGATTCGAACCCGAATCGCCCGGCGATTGGTTACTCAGAGATACGTCCGGTGGGTGTGTGAGGAAGAGGGGGAACGCCACGTGTCGAAGTGGAGAAGGGTTTTGGAAGGTGGAACGTGTGAAGGCGCCGGACACGTCGGAAGCACGTGTGGAGAAGAGTATGAATTTGGAAGAGTGTAAGCAAGCGTGTTTGGAGGATTGTAATTGTACGGCTTATACGAACTCCGATGAGACGACAGGGATGGGGTGCATCAGATGGTATGGTGACTTGGTGGATACGAGGGCGTATGCCGTTGTTGGACAAGATCTCTATGTTCGAGTCGATGCGGTTGAATTAGCTCAATATTCAGAAAATTCGAATCATCACTCAGGAAGGAGAAGTTTGGTGGCAATTGTTGTTGTGCCTATTGTTGCAACACTGCTTCTTGTGACGTCCCTCGTTTATTTGTTGCATAAGAGGAGAAAAGGAAGGGAAAAACAAAGTTTATCTAATTACTTTGGGGACTCTCCAAATCCAAGTGCATTACTTGGTGATCTAAATCCAAGAACTTCAGATCATCTGCCTGTAGTCTTTGATTTCACTACCATTGAAAAAGCAACGGATCATTTTTCTTTCCAAAACAAGCTTGGACAGGGTGGTTTTGGCTCAGTTTATAAGGGCAGACTTAAAAGTGGAGAAGAAATTGCTGTAAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTAGGAGAGTTTAAGAATGAAGTTACATTGATTGCAAAGCTCCAACACAGAAACCTTGTCAGAATTTTAGGATTCTGTGTTCAACATGAAGAGAAGATGTTAGTGTATGAATACTTACCAAACAGAAGCCTTGACTCTTTTATCTTTGATGAACGCAAGAGGGCATTGTTAGGTTGGACTAAACGTTTTGAAATCATTATCGGAATTGCACGAGGGATCTTGTATCTTCATCAAGACTCAAGGTTGAAAATCATCCATCGAGACCTAAAGGCGAGCAATGTTCTATTAGATGGTGATTTAAATCCCAAAATTGCTGATTTTGGTCTGGCAAAAATATTTAGTAATGACCAGATTGAAGCAAATACAAATCGCATTGTTGGAACGTACGGTTATATGTCACCAGAATATGCAATGGAAGGATTATTTTCTGAGAAATCAGATGTATATAGCTTTGGGGTGTTGTTGTTAGAGATCATTGCAGGAAGAAAAAACAACAGCTACAAGGATGCTTCCAACTGCACGAATTTGGTCGGACAGGTTTGGGAGCTGTGGAAACTGGAGAAAGCAATGGAAGTAGTGGACTCAACTTTGGATGAACCGAAATCGTCTTTCGGAAACGCGATAATGAAATGCATCCAAATCGGGCTATTATGTGTTGAAGATGATCCAGCAGATCGTCCAACAATGTCCACAGTTGTTTTCATGCTAAGTAATGAAGTGGTTCTTCCTGCTCCAAAGAAGCCTGCATTTATCTTGAGAAGATCAAATTACAAAAGAGGAGATCAATCAACTGCTACTACTGAAGGAGTCAGCAGGGCCAATTCTGTAAATGATCTAACACTTTCCATTCTTGAAGCTCGTTGA 2562 43.64 MNPAKWIFYIQLFLLILIGHHLPLRASLAIETSNSTATIQIIKDGEFLESNNKNFALGFFSLTNSSTTRRYLGIRYNDIPDLTLVWVANRNKPLSDNSGTFAIDSHGNIVIYTITQNISLWSTNVSIPSTNDVSVQLLNTGNLVVIHTQSQEILWQSFDYPSNTLLPYNKLGFDRRTGFSWFLTSWKAPDDPGEGNFTLRIDPSGFPQLVLYENNLSLWRAGTWTGRGYSGVPEMAAPPPFIINVTYVDDADEVYFTNGIEVDNVLVRLSMDETGFLRRTWRREKDRKWIEFWSGPTEWCDNYNRCGPNSNCDQYNTGQPQCGCLPGFEPESPGDWLLRDTSGGCVRKRGNATCRSGEGFWKVERVKAPDTSEARVEKSMNLEECKQACLEDCNCTAYTNSDETTGMGCIRWYGDLVDTRAYAVVGQDLYVRVDAVELAQYSENSNHHSGRRSLVAIVVVPIVATLLLVTSLVYLLHKRRKGREKQSLSNYFGDSPNPSALLGDLNPRTSDHLPVVFDFTTIEKATDHFSFQNKLGQGGFGSVYKGRLKSGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGFCVQHEEKMLVYEYLPNRSLDSFIFDERKRALLGWTKRFEIIIGIARGILYLHQDSRLKIIHRDLKASNVLLDGDLNPKIADFGLAKIFSNDQIEANTNRIVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIIAGRKNNSYKDASNCTNLVGQVWELWKLEKAMEVVDSTLDEPKSSFGNAIMKCIQIGLLCVEDDPADRPTMSTVVFMLSNEVVLPAPKKPAFILRRSNYKRGDQSTATTEGVSRANSVNDLTLSILEAR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4026380 4039811 - evm.model.ptg000005l.929 HCH3g0588 541316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0588 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 226 IPR036426 -
HCH3g0588 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0588 853 SMART blect_4 39 161 IPR001480 -
HCH3g0588 853 Pfam Protein tyrosine and serine/threonine kinase 530 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0588 853 CDD STKc_IRAK 535 802 - -
HCH3g0588 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 605 810 - -
HCH3g0588 853 Pfam S-locus glycoprotein domain 219 331 IPR000858 GO:0048544(InterPro)
HCH3g0588 853 SUPERFAMILY Protein kinase-like (PK-like) 509 802 IPR011009 -
HCH3g0588 853 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 814 - -
HCH3g0588 853 SMART ntp_6 355 433 IPR003609 -
HCH3g0588 853 CDD B_lectin 40 161 IPR001480 -
HCH3g0588 853 Gene3D Transferase(Phosphotransferase) domain 1 605 808 - -
HCH3g0588 853 ProSiteProfiles PAN/Apple domain profile. 354 434 IPR003609 -
HCH3g0588 853 Pfam PAN-like domain 354 419 IPR003609 -
HCH3g0588 853 ProSiteProfiles Protein kinase domain profile. 529 807 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0588 853 Gene3D Phosphorylase Kinase; domain 1 506 604 - -
HCH3g0588 853 Gene3D - 29 158 IPR036426 -
HCH3g0588 853 ProSiteProfiles Bulb-type lectin domain profile. 33 158 IPR001480 -
HCH3g0588 853 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524(InterPro)
HCH3g0588 853 PIRSF SRK 3 853 IPR024171 GO:0004674(InterPro)
HCH3g0588 853 CDD PAN_AP_plant 353 433 - -
HCH3g0588 853 SMART serkin_6 529 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0588 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 158 - -
HCH3g0588 853 Pfam D-mannose binding lectin 83 187 IPR001480 -
HCH3g0588 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 503 604 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0588 HCH-Chr3:4026380 HCH3g0590 HCH-Chr3:4047209 0.00E+00 dispersed
HCH8g0809 HCH-Chr8:44662569 HCH3g0588 HCH-Chr3:4026380 1.20E-54 dispersed
HCH3g0587 HCH-Chr3:4021609 HCH3g0588 HCH-Chr3:4026380 0.00E+00 tandem
HCH3g0588 HCH-Chr3:4026380 HCH3g0589 HCH-Chr3:4041713 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81396 PF07714 PK_Tyr_Ser-Thr 3.30E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0588 - - - 0.0