Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0589 ATGAATGCTAAATGGATCTTCTTCTACATCGAATTATTTCTGCTTATTTTAATTGGAAATCAACACCCCTTCACCGTTGCCATAGAGAATTCAACAATAATAAAAGACGGACAACTCTTGGTATCAAACAACAAAAACTTCGCTCTCGGTTTTTTCACCCTCGGCAACTCCAACTCCACCACTCGTCGTTATGTCGGAATTCGATACAACGATATTCCTGATCAAACCCTCGTTTGGGTTGCTAACAGAAACAAACCTCTCCACGACAACTCTGGAACCTTCGCCATAGACACCCATGGAAACCTCGTTATCTACACCATCACTCAAAACATCTCCCTTTGGTCCACAAACGTTTCGATCCCGTCGAGGAATGACGTCTCGTTTCATCTTTTGGACACTGGAAATCTTGTAGTAATTCATACACAAAGCCAAGAGATTCTTTGGCAAAGCTTCGACTATCCCTCTCACACCCTTCTTCCATATATGAAAATCGGGTTCAACCGGAGGACCGGTTTCAGCTGGTTCCTGACTTCTTGGAAGGGTCCAGATGATCCGGGTGACGGGAACTTCACTCTCCGGGTCGACTCGACCGGGATTCTGCAGATGTTTTTGTACCAAAACAACGTTCCACGGTGGCGAGCGGGGAGTTGGAATGGGCGCGGATGGAGCGGCGTTCCTGAGATGACGACACAGTTGATCTTCAACGTGACATATTTCGATAACGCGGAGGAGGTTTCATTTGCAAACGGATACATCAAGGATAGGGTTTTGATGAGGTTGGGTTTAGATGAAGCGGGTTTTTTACGTCGTACGTGGAGGCGTGAACAAGACCAGAATTGGATTGATTTATGGTTCGGTCCGACCGAGTGGTGCGACAGCTACAATCGGTGCGGTCCGGATAGCAACTGCAATCAGTATAACGTTGGTCAACCTCAGTGTGGGTGTCTGCCGGGATTCGAACCCGGTTCGCCACGTGATTGGTTACTCAGAGATACGAAGGCTGGGTGTGTGAGGAAGAGAGAGAATGCCACGTGTCGAAGTGGAGAAGGGTTTGTGAGGGTAGCACGTGTGAAGGCACCTGATACATCAAAGGCACGTGTGGATAGGAGTATGAATTTAGCAGAATGTAGGCAAGCGTGTTTGGAGGATTGTAATTGTACGGCTTACACGAGCACTCGTGAGACGACGGGGATTGGGTGCATCAGATGGTATGGGGATTTGGTTGATACGAGGACGTATGCCACTTTTGGACAAGACCTGTATGTCCGAGTCGATGCGGTTGAATTAGCTCAATATCTCGAGAATTCAAATCAGCATTCAGCAAGCAAAAGGAATGTGGCTGCGATTGTTGTTGTATCTATTATTGCAACATTGCTTCTTGTGACCTCCCTCCTCGTTTATTTGTTGCATGAGAGGAGAAAACGAAGGGAAAGACAGAGTTTATATAATTACTTTGGTGACTCTCCAAATCCAAGTGAATTACTTGGTGATCAAAGATCAAGAACTTCAGATCATCTGCCCGTCGTCTTTGATCTTAATACCATAAAAAAAGCAACATCTCATTTTTCTTTTCAAAATAAGCTTGGAGAAGGTGGTTTTGGCTCAGTTTATAAGGGCAGGCTTAAAAGTGGAGAGGAAATTGCTGTAAAAAGGCTAGCAAAGAGTTCAGGGCAAGGAATAGGAGAGTTCAAGAATGAAGTGACATTAATTGCAAAGCTCCAACATAGAAACCTTGTGAGAATTTTAGGATACTGCCTTCAACATGAAGAGAAGATGTTAGTGTATGAATACTTGCCAAACAAAAGCCTGGACTCTTTCATCTTTGATGAAAGCAAGAGAGCTTTGCTAGATTGGGCTAAACGTTTTGAAATTATTATTGGAATTGCACGAGGGATCTTGTATCTTCATCAAGACTCGAGATTGAAAATCATCCATCGAGACCTCAAGGCGAGCAATGTTCTATTAGATGGTGATTTAAATCCCAAGATTGCTGATTTTGGTTTGGCCAAAGTATTTAGTAATGACCAAATTCAAGCAAATACAAATCATATAGTTGGAACATATGGTTATATGTCACCGGAATACGCAATGGAAGGGTTATTTTCTGAGAAATCAGATGTATATAGCTATGGGGTGTTGTTATTAGAGATCATTGCAGGAAGAAAAAACAATAGCTACAAGGATGCTTCCTACTGCATAAATTTGGTCGGACAAGTTTGGGAGCTGTGGAAAGTGGATAAAGCAATGGAAGCAGTGGACTCAACTTTGGATGAATCAAACTCGTCTTTTGGAAATGCGATAATGAAATGCATCCAAATAGGGTTATTGTGTGTGGAAGATGACCCGACAGATCGTCCAACAATGTCCACAGTTGTCTTCATGCTAAGTAACGAAGTGGTTCTTCATGCTCCAAAGAATCCTGCATTTATCTTCAAGAGATCAAATTATAAGAGAGGAGATCCATTAACCAGTACTACTGAAGGAACCAGCTCCATCAATGATGTAACGATTTCCATGCTTGAAGTTCGTTAA 2532 43.09 MNAKWIFFYIELFLLILIGNQHPFTVAIENSTIIKDGQLLVSNNKNFALGFFTLGNSNSTTRRYVGIRYNDIPDQTLVWVANRNKPLHDNSGTFAIDTHGNLVIYTITQNISLWSTNVSIPSRNDVSFHLLDTGNLVVIHTQSQEILWQSFDYPSHTLLPYMKIGFNRRTGFSWFLTSWKGPDDPGDGNFTLRVDSTGILQMFLYQNNVPRWRAGSWNGRGWSGVPEMTTQLIFNVTYFDNAEEVSFANGYIKDRVLMRLGLDEAGFLRRTWRREQDQNWIDLWFGPTEWCDSYNRCGPDSNCNQYNVGQPQCGCLPGFEPGSPRDWLLRDTKAGCVRKRENATCRSGEGFVRVARVKAPDTSKARVDRSMNLAECRQACLEDCNCTAYTSTRETTGIGCIRWYGDLVDTRTYATFGQDLYVRVDAVELAQYLENSNQHSASKRNVAAIVVVSIIATLLLVTSLLVYLLHERRKRRERQSLYNYFGDSPNPSELLGDQRSRTSDHLPVVFDLNTIKKATSHFSFQNKLGEGGFGSVYKGRLKSGEEIAVKRLAKSSGQGIGEFKNEVTLIAKLQHRNLVRILGYCLQHEEKMLVYEYLPNKSLDSFIFDESKRALLDWAKRFEIIIGIARGILYLHQDSRLKIIHRDLKASNVLLDGDLNPKIADFGLAKVFSNDQIQANTNHIVGTYGYMSPEYAMEGLFSEKSDVYSYGVLLLEIIAGRKNNSYKDASYCINLVGQVWELWKVDKAMEAVDSTLDESNSSFGNAIMKCIQIGLLCVEDDPTDRPTMSTVVFMLSNEVVLHAPKNPAFIFKRSNYKRGDPLTSTTEGTSSINDVTISMLEVR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4041713 4046107 - evm.model.ptg000005l.928 HCH3g0589 541317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0589 843 Gene3D Transferase(Phosphotransferase) domain 1 598 805 - -
HCH3g0589 843 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544(InterPro)
HCH3g0589 843 CDD STKc_IRAK 528 795 - -
HCH3g0589 843 ProSiteProfiles Bulb-type lectin domain profile. 25 151 IPR001480 -
HCH3g0589 843 Pfam Protein tyrosine and serine/threonine kinase 523 792 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0589 843 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524(InterPro)
HCH3g0589 843 SMART blect_4 31 154 IPR001480 -
HCH3g0589 843 CDD B_lectin 33 154 IPR001480 -
HCH3g0589 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 808 - -
HCH3g0589 843 PIRSF SRK 1 843 IPR024171 GO:0004674(InterPro)
HCH3g0589 843 Gene3D - 21 151 IPR036426 -
HCH3g0589 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0589 843 SMART ntp_6 346 424 IPR003609 -
HCH3g0589 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 185 IPR036426 -
HCH3g0589 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 491 597 - -
HCH3g0589 843 CDD PAN_AP_plant 344 424 - -
HCH3g0589 843 SMART serkin_6 522 794 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0589 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 598 803 - -
HCH3g0589 843 Pfam D-mannose binding lectin 76 180 IPR001480 -
HCH3g0589 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 151 - -
HCH3g0589 843 Pfam PAN-like domain 345 410 IPR003609 -
HCH3g0589 843 SUPERFAMILY Protein kinase-like (PK-like) 500 795 IPR011009 -
HCH3g0589 843 Gene3D Phosphorylase Kinase; domain 1 497 597 - -
HCH3g0589 843 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
HCH3g0589 843 ProSiteProfiles Protein kinase domain profile. 522 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0586 HCH-Chr3:4014815 HCH3g0589 HCH-Chr3:4041713 0.00E+00 dispersed
HCH3g0587 HCH-Chr3:4021609 HCH3g0589 HCH-Chr3:4041713 0.00E+00 dispersed
HCH3g0589 HCH-Chr3:4041713 HCH3g0591 HCH-Chr3:4065289 0.00E+00 dispersed
HCH3g0588 HCH-Chr3:4026380 HCH3g0589 HCH-Chr3:4041713 0.00E+00 tandem
HCH3g0589 HCH-Chr3:4041713 HCH3g0590 HCH-Chr3:4047209 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81397 PF07714 PK_Tyr_Ser-Thr 3.30E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0589 - - - 0.0