Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0590 ATGAATCCAGCTAAATGGATCTTCTACCTTCAATTATTTCTGCTCATTTTAGTTGGCCATCACCGCTCCTTGAGTGTTGCCATTGCCATAGAGAATTCAACGATTATCCAAATAATAAAGGACGGACAACTCTTGAAATCTCCCAACAATAACTTCGCTCTTGGTTTTTTCAGCCCCGGCAACTCAACCACTACTCGCCGATACGTCGGAATTTGGTACAACGATATTCCAGATCCAACCATCGTTTGGGTTGCTAACAGAGATAAACCATTGAACGGCAATTCTGGAACCTTCGCCATAGACAGCCATGGAAACCTCGTTATATACACCATCTCTCAAAACATCTCTCTTTGGTCTACAAACGTTTCGCTTCCGTCGACGAACGATGTGTCGGTCCATCTTTCGGACACGGGGAATCTTGTAGTAACTCACAGACAAAGCCAAGAGATACTTTGGGAAAGCTTTGATTATCCCTCCCATACCCTTCTACCCTATAACAAAATTGGGTTCGACCGGAGAACCGGGTTCAGCCGGTTCCTGACTTCCTGGAAGGCTCCGGATGATCCGGGCTCGGGAAATTTCACTCTCAGAATCGACCCGACCGGATATCCACAGATGTTTTTATACCAAAACCATGCCCCGCTATGGCGAGTCGGGTCTTGGACCGGGCTCCGGTGGTGCGGTGTACCCCAGATGAGGTCTTTGGTGGTATCTCCCTTCATCATACGCGTGACATTCGTCGACAATGCCGACGAGGTTTTCTTAATAGACCGGGTTACAACGGGCAATGTCTTAACGAGGATGTATTTAGATGAATATGGTTTTTTACGTCGTTCATGGAGACGTGAGCATCAATCCAAGTGGGTTGAATACTATTCGGCTCCGACCGAGTGGTGCGACAGGTACAACCGCTGCGGTCCGAACAGCAACTGCGATGAATATAACGGGGGTCAGTTTCAGTGCACGTGCTTGCCCGGATTTGAACCCAACTCGCCCAGTGACTGGTTACTCAGAGATGCGTCAGGCGGGTGTGTGAGGAAGATGGGAAATGATGCTACGTGTCGAAGTGGAGAAGGGTTTGTGGAGGTAGCACGTGTGAAGTTACCGGACACGTCGAACGCACGTGCCAACAGGAACATGAGTTTAGATCTGTGTCGGCAAATGTGTCTGGAGGATTGTAATTGTACGGCTTACACGAGCGCAAATGAGGTGACGAGGAGCGGTTGCGTGACATGGTATGGGGATTTGATAGATACGCGGATGTTTGCAAATGCTAGCGATGGAGAATATCTCTATGTACGAGTTGATGCAATTGAATTAGCTCAGTATACCAAAAATTCAACTCATGATGATTCAGCAAGAAATTTTCGTCCCTTGTCAAAAACAAATCATCATTCAGCAAGGAAAAGTTTGGTGGCAATTATTGTTTTGTGTATCATTGCAACACTGCTACTTATATCATCCCTCGTTTATTTGTGGCATAAGAAGCAAAAAAGAAGGGAAAGACAAAGGTTATCAAATTACTTTGGGGAACTAGATGATCAAAGTCAAAGAGGTTCAGATCATCTGCATGTCTTTGATCTCAAAACCATTATAAAAGCAACAGATAATTTTTCTCCTCATAACAAGCTTGGACAAGGTGGCTTTGGCTCAGTTTATAAGGGAACACTAAAAAGTGGACAAGAAATTGCAATAAAAAGGCTAGCAAAGAATTCAGGGCAAGGAATAGGAGAGTTTAAGAATGAAGTTACACTAATTGCAAAGCTCCAACACAGAAACCTTGTCAGAATTTTAGGATACTGTGTTCGACATGAAGAGAAGATGTTAGTGTATGAATATTTGCCAAACAAAAGCCTCGACTCTTTCATCTTTGATGAAATCAAGAGGGGTTTACTGGATTGGACTAAACGTTTTGAAATTATTATCGGAATTGCACGAGGGATCTTATACCTTCATCAAGACTCAAGATTGAAAATCATTCATCGAGACCTAAAGGCTAGCAATGTTCTATTGGATGGTAATTTAAATCCCAAGATTGCTGATTTTGGTTTGGCAAAAATATTTAGTAATGACCAAATTCAAGAAAATACAAGTCGCATAGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGGAAGGATTATTCTCTGAAAAGTCAGATGTATATAGTTTTGGGGTATTGTTGTTAGAGATCATTGCAGGCAGAAAAAACAATAGCTACAAGGATGCTGCTTCCAACAACATAAACTTGGTTGGAAATGTTTGGGAGCTGTGGAAAATGGATAAAGCAATGAAAGTAGTGGACTCAACTTTGGATGAATCAAACTCGTCTTTTGGAAATGCGATAATGAAATGCATCCAAATAGGGTTATTGTGTGTGGAAGATGACTCGACAGATCGTCCAACAATGTCCACAGTTGTTTCCATGCTAAGTAATGAAGTGGCTCTTCCTCCTCCAAGGAAGCCTGCATTTATCTTACACAGATCAAATTATAACAAAAGAGAACCATCAACCATTTCCACTGAAGGAACCGGTACTACTGAAGGAACCAGCACTTTTAATGATGTAACAATTTCCATGCTTGAAGTTCGTTAA 2601 42.45 MNPAKWIFYLQLFLLILVGHHRSLSVAIAIENSTIIQIIKDGQLLKSPNNNFALGFFSPGNSTTTRRYVGIWYNDIPDPTIVWVANRDKPLNGNSGTFAIDSHGNLVIYTISQNISLWSTNVSLPSTNDVSVHLSDTGNLVVTHRQSQEILWESFDYPSHTLLPYNKIGFDRRTGFSRFLTSWKAPDDPGSGNFTLRIDPTGYPQMFLYQNHAPLWRVGSWTGLRWCGVPQMRSLVVSPFIIRVTFVDNADEVFLIDRVTTGNVLTRMYLDEYGFLRRSWRREHQSKWVEYYSAPTEWCDRYNRCGPNSNCDEYNGGQFQCTCLPGFEPNSPSDWLLRDASGGCVRKMGNDATCRSGEGFVEVARVKLPDTSNARANRNMSLDLCRQMCLEDCNCTAYTSANEVTRSGCVTWYGDLIDTRMFANASDGEYLYVRVDAIELAQYTKNSTHDDSARNFRPLSKTNHHSARKSLVAIIVLCIIATLLLISSLVYLWHKKQKRRERQRLSNYFGELDDQSQRGSDHLHVFDLKTIIKATDNFSPHNKLGQGGFGSVYKGTLKSGQEIAIKRLAKNSGQGIGEFKNEVTLIAKLQHRNLVRILGYCVRHEEKMLVYEYLPNKSLDSFIFDEIKRGLLDWTKRFEIIIGIARGILYLHQDSRLKIIHRDLKASNVLLDGNLNPKIADFGLAKIFSNDQIQENTSRIVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIIAGRKNNSYKDAASNNINLVGNVWELWKMDKAMKVVDSTLDESNSSFGNAIMKCIQIGLLCVEDDSTDRPTMSTVVSMLSNEVALPPPRKPAFILHRSNYNKREPSTISTEGTGTTEGTSTFNDVTISMLEVR 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4047209 4050955 - evm.model.ptg000005l.927 HCH3g0590 541318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0590 866 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 504 613 - -
HCH3g0590 866 CDD EGF_CA 299 328 - -
HCH3g0590 866 SMART ntp_6 355 435 IPR003609 -
HCH3g0590 866 SMART blect_4 36 158 IPR001480 -
HCH3g0590 866 CDD STKc_IRAK 544 812 - -
HCH3g0590 866 Gene3D Transferase(Phosphotransferase) domain 1 614 818 - -
HCH3g0590 866 SUPERFAMILY Protein kinase-like (PK-like) 523 844 IPR011009 -
HCH3g0590 866 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 614 820 - -
HCH3g0590 866 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
HCH3g0590 866 ProSiteProfiles EGF-like domain profile. 295 333 IPR000742 -
HCH3g0590 866 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524(InterPro)
HCH3g0590 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0590 866 Pfam D-mannose binding lectin 80 184 IPR001480 -
HCH3g0590 866 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 189 IPR036426 -
HCH3g0590 866 ProSiteProfiles Protein kinase domain profile. 538 818 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0590 866 SMART serkin_6 538 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0590 866 Pfam Protein tyrosine and serine/threonine kinase 541 812 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0590 866 CDD PAN_AP_plant 353 435 - -
HCH3g0590 866 Gene3D - 33 155 IPR036426 -
HCH3g0590 866 CDD B_lectin 37 158 IPR001480 -
HCH3g0590 866 Pfam PAN-like domain 354 419 IPR003609 -
HCH3g0590 866 PIRSF SRK 2 866 IPR024171 GO:0004674(InterPro)
HCH3g0590 866 Gene3D Phosphorylase Kinase; domain 1 512 613 - -
HCH3g0590 866 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 824 - -
HCH3g0590 866 ProSiteProfiles PAN/Apple domain profile. 354 436 IPR003609 -
HCH3g0590 866 Pfam S-locus glycoprotein domain 216 330 IPR000858 GO:0048544(InterPro)
HCH3g0590 866 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0588 HCH-Chr3:4026380 HCH3g0590 HCH-Chr3:4047209 0.00E+00 dispersed
HCH3g0590 HCH-Chr3:4047209 HCH6g0718 HCH-Chr6:40666946 2.10E-182 dispersed
HCH3g0589 HCH-Chr3:4041713 HCH3g0590 HCH-Chr3:4047209 0.00E+00 tandem
HCH3g0590 HCH-Chr3:4047209 HCH3g0591 HCH-Chr3:4065289 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81398 PF07714 PK_Tyr_Ser-Thr 2.00E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0590 - - - 0.0