Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0591 ATGAATCCTGCTAAATGCGTCTTCTATACTCTGTTTTTGCTCATTTTAGTCCGCAACTTAAGTGTTTCTGTCCAGAATTCAACAGCCGATGCAGCTGCTATCCAAATAATAAAGGACGGACAACTCTTGGAATCTTCCAGGAAAATCTTCGTTCTTGGTTTTTTCAGCCTCAGCAACTCATCCACTACTCGCCGGTATGTCGGAATTCGGTACAACGATATTCCCGATCTAACCATCGTTTGGGTTGCTAACAGAGATAAACCCTTGAACGACAATTCAGGAACCTTCGCTATAGACAGCCATGGAAACCTGGTTATATACACAGTCACTGAAAACATTTCTCTTTGGTCCATAAACGTTTCGATTCCGTTCACGAACGATGTGTCAGTTCAGCTTTTGGACTCTGGAAATCTTATAATCTACAGAAGAAGCGGAGGGATTCTTTGGGAAAGCTTTGATCATCCCTCTGATACCCTTCTCCCATATATGAAAATCGGGTTCGACCGGAGGACCGGGTTCAGCCGGTCGTTGACTTCTTGGAAGGGTCCAGATGATCCGAGTTCGGGAAATTTCACAATCAGAATCGAACCGACCGGACTTCCACAAATGTTTTTATACCAAAACAATGTTCCAATATGGCGAGTCGAGACTTGGATGGGGCGCGGATGGGGTGGTGTAGCCCAGAAGGCGTCACCATCTTGGGCGCCACCATCTTTTCTCGCAGACATGACATACGTTGACAATGCCGACGAGGTTTCCACCACATACATTGCCGATGTGGATTTTGTCCTCCTGAGAGCCACTTTAGATGAATTGGGTTTCATACATAATTCGTGGAGGCTTGAAAATGATCCTAGATGGATTGCATCACTGACGGGTCCGACCGAGTGGTGTGACAACTACAATTGGTGTGGTCGGAACAGTAAATGCGACCAGTCTTACGCCGACCAATTTCAGTGCACGTGCCTTCCTGGATTTGAACCCAAATCTTCCCATGATTGGTTAGTGACAGATGCGACAGCAGGATGTGTAAGGAAGAGAGAAAACGCCATATGCCAAAGTGGAGAACGGTTTGTGGAGGTAGCAAGCGTGAAAATGCCAGACACATCAACGGCACGTACGCACAAGACAATCAATTTAGAAGAGTGTGAGAAATCATGTCTCAATGATTGTAATTGCACGGCTTACGCTCTCGCCGATGAGAATATGGTAACAGATATCGATTGCGTGACATGGTACGGGGATTTGATAGACATGCGGGTGAATGTTAATACCCGCAATGGACGATCTCTATATTTACGAGTTGGTGCCATTGAACTAGCTCAATACACCGAAAAATCACATCATGGTTCAGCAAGGACGAAAATTGTGGCGACAATTGTTGTTGTATCTACTGTTGCAACACTGCTTCTTGTGTTCTCCCTCGTTTATTTGTGGCATAAGAAGCAAAAAATAAGAAAGGAAAGACAAAGTTCATGGGACTCTCCAAATCCAAGTGAGTTACTTGGTGATCAAAGTCAAAGAGCTTCAGATCATCTGCATGTCTTTGGTCTCAAAACCATAATAAAAGCAACAAATGATTTTTCTTTTCGTAACAAGCTTGGACAAGGTGGTTTTGGCTCGGTTTATAAGGGAAGACTGAAAAGTGGAAAGGAAATTGCAGTAAAAAGGCTAGCAAAGAATTCAGGGCAAGGAATCGGAGAGTTTAAGAATGAAGTTACATTAATTGCAAAGCTCCAACACAGAAACCTCGTCAGAATTTTAGGATACTGCCTTCAACATGAAGAGAAGATGTTAGTGTATGAATATTTGCCAAACAAAAGCCTTGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTACTAGATTGGACTAAACGTTTTGAAATTATTATCGGAATTGCACGAGGGATCTTGTATCTTCATCAAGACTCGAGATTGAAAATCATCCATCGAGACCTAAAAGCGAGCAATGTTCTATTGGATGGTGATTTAAATCCCAAGATTGCTGATTTTGGTTTGGCAAAAATATTTAATAATGATCAGATTCAAGCAAATACAAATCGCATAGTTGGAACATATGGTTATATGTCACCGGAATATGCAATGGGAGGATTATTTTCCGAAAAATCAGATGTATATAGCTTTGGGGTATTGTTGTTAGAGATCATTGCAGGCAGAAAAAACAATAGCTACAAGGATGGTTCTAACTGTATAAATTTGGTCGGAAAAGTTTGGGAGCTGTGGAAAGTGGAGAAAGCAATGGAAGTAGTGGACTCAAGTTTGGATGAAACAAAATCGTCTTTTGAAAATGCGATAATAAAATGCATCCAAATAGGGCTGTTGTGTGTGGAAGATGACTCGACAGATCGTCCAACAACGTCCATGGTGGTGTTCATGTTAAGTAATGAAGTGGTTCTTCCTTCTCCAAAGAAGCCTGCATTTATCTTTACAAGTTCAAATTATAAGACTGGAGATCCATCAACAAGTGCTAATGAAGGAACCAGCTCTATAAATGATGTGACAGTTTCCATGCTTGAATTTCGTTAA 2550 41.76 MNPAKCVFYTLFLLILVRNLSVSVQNSTADAAAIQIIKDGQLLESSRKIFVLGFFSLSNSSTTRRYVGIRYNDIPDLTIVWVANRDKPLNDNSGTFAIDSHGNLVIYTVTENISLWSINVSIPFTNDVSVQLLDSGNLIIYRRSGGILWESFDHPSDTLLPYMKIGFDRRTGFSRSLTSWKGPDDPSSGNFTIRIEPTGLPQMFLYQNNVPIWRVETWMGRGWGGVAQKASPSWAPPSFLADMTYVDNADEVSTTYIADVDFVLLRATLDELGFIHNSWRLENDPRWIASLTGPTEWCDNYNWCGRNSKCDQSYADQFQCTCLPGFEPKSSHDWLVTDATAGCVRKRENAICQSGERFVEVASVKMPDTSTARTHKTINLEECEKSCLNDCNCTAYALADENMVTDIDCVTWYGDLIDMRVNVNTRNGRSLYLRVGAIELAQYTEKSHHGSARTKIVATIVVVSTVATLLLVFSLVYLWHKKQKIRKERQSSWDSPNPSELLGDQSQRASDHLHVFGLKTIIKATNDFSFRNKLGQGGFGSVYKGRLKSGKEIAVKRLAKNSGQGIGEFKNEVTLIAKLQHRNLVRILGYCLQHEEKMLVYEYLPNKSLDSFIFDESKRALLDWTKRFEIIIGIARGILYLHQDSRLKIIHRDLKASNVLLDGDLNPKIADFGLAKIFNNDQIQANTNRIVGTYGYMSPEYAMGGLFSEKSDVYSFGVLLLEIIAGRKNNSYKDGSNCINLVGKVWELWKVEKAMEVVDSSLDETKSSFENAIIKCIQIGLLCVEDDSTDRPTTSMVVFMLSNEVVLPSPKKPAFIFTSSNYKTGDPSTSANEGTSSINDVTVSMLEFR 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4065289 4071109 + evm.model.ptg000005l.926 HCH3g0591 541319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0591 849 CDD STKc_IRAK 534 801 - -
HCH3g0591 849 SMART ntp_6 353 435 IPR003609 -
HCH3g0591 849 ProSiteProfiles PAN/Apple domain profile. 352 436 IPR003609 -
HCH3g0591 849 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524(InterPro)
HCH3g0591 849 Gene3D Phosphorylase Kinase; domain 1 503 603 - -
HCH3g0591 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 186 IPR036426 -
HCH3g0591 849 CDD B_lectin 35 155 IPR001480 -
HCH3g0591 849 Gene3D - 24 152 IPR036426 -
HCH3g0591 849 Gene3D Laminin 298 348 - -
HCH3g0591 849 ProSiteProfiles EGF-like domain profile. 294 332 IPR000742 -
HCH3g0591 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 809 - -
HCH3g0591 849 PIRSF SRK 1 849 IPR024171 GO:0004674(InterPro)
HCH3g0591 849 ProSiteProfiles Protein kinase domain profile. 528 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0591 849 Pfam S-locus glycoprotein domain 213 330 IPR000858 GO:0048544(InterPro)
HCH3g0591 849 SMART blect_4 34 155 IPR001480 -
HCH3g0591 849 Pfam Protein tyrosine and serine/threonine kinase 529 797 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0591 849 CDD PAN_AP_plant 352 435 - -
HCH3g0591 849 Gene3D Transferase(Phosphotransferase) domain 1 604 807 - -
HCH3g0591 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0591 849 Pfam PAN-like domain 352 419 IPR003609 -
HCH3g0591 849 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
HCH3g0591 849 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 29 814 - -
HCH3g0591 849 SMART serkin_6 528 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0591 849 Pfam D-mannose binding lectin 78 181 IPR001480 -
HCH3g0591 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 497 603 - -
HCH3g0591 849 SUPERFAMILY Protein kinase-like (PK-like) 511 801 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0589 HCH-Chr3:4041713 HCH3g0591 HCH-Chr3:4065289 0.00E+00 dispersed
HCH3g0591 HCH-Chr3:4065289 HCH3g0595 HCH-Chr3:4089088 4.20E-175 dispersed
HCH3g0590 HCH-Chr3:4047209 HCH3g0591 HCH-Chr3:4065289 0.00E+00 tandem
HCH3g0591 HCH-Chr3:4065289 HCH3g0592 HCH-Chr3:4073130 1.20E-172 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81399 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0591 - - - 0.0