Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0592 ATGAAAAAACTGCTAACCAGATGCAATCTTTCACTTCTTTTTTCATGGACATTGATATCTTTGTTTCAAACAAATTCATTAGCAATTACAAGTAATAGCATAAAATCAAACCAATCCATCAATGGCAGTAACCAAACATTGGTTTCATCAAGCCAAAACTTTGTGTTGGGATTCTTCACTCCTCAAGGCTCCCAATTTCAGTACTTAGGAATATGGTACAAAAACATCCCACAAACTGTTGTCTGGATAGCAAACAGAGACAACCCACTTGTAAATTCCTCTGGCACATTAAAATTCAATGAACAAAACATTGTTCTTGTCAATGAAACAGGTGCAGTTTTATGGTCTGCCAATTCTTCAAGATTATTGGAACATCCAGTTGCTCAGCTTCTAGACACAGGAAACTTTGTCTTGAGAGATTCTCAGTCTCAAGATGATTACATTTGGCAAAGCTTTGATTTTCCCTCTGACACTTTATTACCAGGTATGAAACTCGGGAAGAACATGAAAACCGGCGGGAACCGAATGTTGACGTCGAGGAAAACATCAAATGATGTGTCGTCTGGAAACTTCACTTACTGTGTTGAACCAGATGGTCTTCCTCAGTTTGTCATTCATGATGGATCCGACAAGGCATATCGCGGCGGACCGTGGTACGGCACGAGGTTTAGTGGAAGTCCACCTTTGAGAGAAACAACAATTTATCATCCAATATTCAATTACACTGCAGAAGAAGTGACATATTCTTATACTGCTTCAAGTAATATCATTTCTAGACTTGTTTTGAATGCAGCTGGGATATTGCAACATGTCTTTTGGGACGATGGAATTAAAGATTGGCATGTTTTGTATACGTTACCGGGAGATCGTTGTGATGAATATGGATTTTGTGGAGATTTTGGTGTGTGTACTTTTTCACTCACTCCACATTGTGATTGTATTGATGGGTTTGAACCAAGATCTCCTCGGAATTGGGCAAAGTTTATATGGTCTGATGGATGTGTTAGAAAGGATGAAAAAGTATGCAGAGATGGAGAGGGGTTTAAGAAAATTAGTAGCTTGAAATTGCCGGATGCTTCTGGGAACTTTGTGAAAGTTAATATGAGTATTCAAGATTGTGAGGCGGTGTGCTTGAATAACTGCTCTTGTTTAGCCTATGGAGTAATGGAAGTTATTGGAGGTGGATATGGCTGTGTTACATGGTTTCAGAAATTGATTGATATTAGATTTGTACCTGAAAATGGACAGGATCTTTTTGTGAGAGTGGCAGCTTCTGAATTAGAATCAAGTAAAACAAAGCTTATGATCGCTCTGATTGTGTCTTTGGCTTCATTTCTAACTTTCCTGGTTTTAGTGAGTTTCTTCATGGTAAGGCGTAAAAGAAAAGTTAGAGATAGTGAGAATATTGTAACTGAGGCTCAGACTCAAGAGAACGAAGCCGAGATGCCTTTATATGACTTTACTACAATTGAAGTTGCCACAAACTATTTTTCTTTTAATAATAAGATCGGCGAAGGTGGTTTCGGTCCCGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCAGTAAAACGGCTGGCAGAGGGCTCTGGCCAGGGGCAAAACGAATTCAAAAACGAGGTTCTTTTGATCTCCCAACTTCAGCATCGAAATCTCGTCAAGCTTCTCGGTTTCTGCATTCACCAAGAAGCTACGTTACTGATCTATGAATATATGCCGAACAAAAGTTTAGACTACTTCCTCTTTGATCACAAGAGGCGTGCTTTATTGAACTGGAAAAAGAGAATGGACATCATAATTGGGATCGCTCGAGGGCTTCTTTATCTTCACCGAGATTCAAGACTCCTGATAATACATAGGGATCTCAAAGTGAGCAATATATTACTAGACAATGATATGAATCCAAAAATTTCAGACTTTGGTATGGCGCGTATGTTTGGCGAAGATCAAACCGAAACAAAAACCAAAAGAGTTGTTGGGACCTATGGCTATATGTCCCCGGAGTATGCAATAGATGGATGCTTTTCATCGAAATCTGACATCTTCAGCTTTGGAGTTATGCTTTTGGAAATAGTAAGTGGTAAGAAGAACAGAGGTTTTTTCCATCCAGACCATCAATTAAATCTTCTTGGACATGCATGGAAACTGTGGGATGAAGGAAATACTTTGGAATTAATTGATGCAATTTTGGAGGATCGATTCCAACCATCCGAAGCGCTGCGATGCATTCAAGTCGGTCTATTGTGTGTTCAAAAAAATCCGGAAGAAAGGCCAACCATGTGGTCCGTACTTTCTATGCTAGAGAGTGAAAATATGTTGCTATCTCCTCCCAAAAGGCCTGGATTTTACACCGAGAGAATCATTTGTAGTAACGATGAATCGTTAGGCGAAAAAATGATCTCTACTTCGAACGAAGTGACGGTTACAATGGTAGATGGTCGTTAG 2448 39.42 MKKLLTRCNLSLLFSWTLISLFQTNSLAITSNSIKSNQSINGSNQTLVSSSQNFVLGFFTPQGSQFQYLGIWYKNIPQTVVWIANRDNPLVNSSGTLKFNEQNIVLVNETGAVLWSANSSRLLEHPVAQLLDTGNFVLRDSQSQDDYIWQSFDFPSDTLLPGMKLGKNMKTGGNRMLTSRKTSNDVSSGNFTYCVEPDGLPQFVIHDGSDKAYRGGPWYGTRFSGSPPLRETTIYHPIFNYTAEEVTYSYTASSNIISRLVLNAAGILQHVFWDDGIKDWHVLYTLPGDRCDEYGFCGDFGVCTFSLTPHCDCIDGFEPRSPRNWAKFIWSDGCVRKDEKVCRDGEGFKKISSLKLPDASGNFVKVNMSIQDCEAVCLNNCSCLAYGVMEVIGGGYGCVTWFQKLIDIRFVPENGQDLFVRVAASELESSKTKLMIALIVSLASFLTFLVLVSFFMVRRKRKVRDSENIVTEAQTQENEAEMPLYDFTTIEVATNYFSFNNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQNEFKNEVLLISQLQHRNLVKLLGFCIHQEATLLIYEYMPNKSLDYFLFDHKRRALLNWKKRMDIIIGIARGLLYLHRDSRLLIIHRDLKVSNILLDNDMNPKISDFGMARMFGEDQTETKTKRVVGTYGYMSPEYAIDGCFSSKSDIFSFGVMLLEIVSGKKNRGFFHPDHQLNLLGHAWKLWDEGNTLELIDAILEDRFQPSEALRCIQVGLLCVQKNPEERPTMWSVLSMLESENMLLSPPKRPGFYTERIICSNDESLGEKMISTSNEVTVTMVDGR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4073130 4076947 - evm.model.ptg000005l.925 HCH3g0592 541320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0592 815 SMART blect_4 38 155 IPR001480 -
HCH3g0592 815 SUPERFAMILY Protein kinase-like (PK-like) 481 784 IPR011009 -
HCH3g0592 815 PIRSF SRK 3 815 IPR024171 GO:0004674(InterPro)
HCH3g0592 815 SMART ntp_6 343 422 IPR003609 -
HCH3g0592 815 Gene3D - 26 152 IPR036426 -
HCH3g0592 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 776 - -
HCH3g0592 815 Pfam PAN-like domain 342 408 IPR003609 -
HCH3g0592 815 Pfam D-mannose binding lectin 79 181 IPR001480 -
HCH3g0592 815 CDD PAN_AP_plant 343 423 - -
HCH3g0592 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 572 - -
HCH3g0592 815 ProSiteProfiles Bulb-type lectin domain profile. 31 151 IPR001480 -
HCH3g0592 815 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544(InterPro)
HCH3g0592 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 185 IPR036426 -
HCH3g0592 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 783 - -
HCH3g0592 815 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
HCH3g0592 815 Pfam Domain of unknown function (DUF3403) 770 815 IPR021820 GO:0004674(InterPro)
HCH3g0592 815 ProSiteProfiles Protein kinase domain profile. 497 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0592 815 Gene3D Phosphorylase Kinase; domain 1 456 572 - -
HCH3g0592 815 CDD B_lectin 40 155 IPR001480 -
HCH3g0592 815 SMART serkin_6 497 768 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0592 815 Pfam Protein tyrosine and serine/threonine kinase 498 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0592 815 CDD STKc_IRAK 503 769 - -
HCH3g0592 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0592 815 Gene3D Transferase(Phosphotransferase) domain 1 573 775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0592 HCH-Chr3:4073130 HCH6g0716 HCH-Chr6:40611922 7.10E-220 dispersed
HCH7g0198 HCH-Chr7:1371912 HCH3g0592 HCH-Chr3:4073130 2.30E-125 dispersed
HCH3g0591 HCH-Chr3:4065289 HCH3g0592 HCH-Chr3:4073130 1.20E-172 tandem
HCH3g0592 HCH-Chr3:4073130 HCH3g0593 HCH-Chr3:4079324 1.00E-290 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81400 PF07714 PK_Tyr_Ser-Thr 7.90E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0592 - - - 0.0