Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0593 ATGAGAACATTGATGATACAAAGGTGCAATCTTTTGCCTCTGTTCTTATGTTTTACAATGATGTCTCTGTTTTCTGAAAAGTCAACTGCAGCTGACAGTTTAAGAGCAGAGCAATCAATGAATGAAAACCAGACATTGATTTCATTAGCCCAAAAATTTGAACTAGGATTCTTCCGTACCCAAAATTCAAAGTTTCTATATTTAGGAATATGGTATAAGAACATTCCAAATTCTATTGTCTGGGTGGCAAACAGAGACAACCCAATTGTAAATTCCTCTGGCTTGTTAACTTTCAGGCAAGGAAAGTTGGTCGTTATAAACCAAACAGATGATGTTTTATGGTCGTCAAATTCTGAAAAGGCAGTGAAAAATCCGGTCTTAAAGCTTCTAGATACAGGTAATTTAGTTTTGTTGGAATCAGGGTCTGCAGAATTGGTGTGGCAGAGTTTTGATTATCCTTCTCATACTATGTTACCTGGCATGAAACTCGGGTGGGATTTAAAAGCGGGTCTGAACCGGAAGTTGACATCGTGGAAAACTTCCGATGACCCATCTTCCGGTGAGTTTACGTTCGGTATTGATCCTGATGGCCTTCCTCAATTCGTCATTCGAAAAGGAGACAATGTTACTTACCGGAGCGGGCCATGGTACAGCGGTCGGGTTAGCGGGGGTCCGTCTTTCATCGAAATTGAAACTTACAAACCTGAATTCATCCAGACTTCTGATGAAGTGTACTATTCGAATGAGCCTTTTGTAAATATCTTTGCCAGAATTGTGATAGACGAAGATGGCTATGTCCTAATAGAATCATGGGATGACAGCCTTAAAAATTGGAACCAATGGTTTAGATATGAAGGAGACCTTTGTGATCACTATGGATTTTGTGGAGAGTCTGGTGTCTGTCATATTTCTCCTACCGCAATTTGCGAATGCGTGGTCGGGTTCGAACCGAAGGAGCCGGAGAAGTGGGGGACCGAATCGTGGTTAGACGGATGTGTGAGAAAGGACCCGGAAATATGTAGAAATGGAGAGGGATTTAGAATGCTGAGAGGTGTGAAATTGCCAGATTCTTCAGGGAAGTTTGTGAATGTTAATAAGAGTGCTCAGGATTGTGAAACAGATTGTTTGAATAATTGCTCTTGCTTAGCTTATGGGATAATGAATGATCCTAAAACAGGAAAAAGCTGTGTCACTTGGTTTAAAGAACTGATTGATATTAGATATGTGACAAAATATGGAGAAGATCTCTATGTGAGAGTTGCAGCTTCAGAATTAGAATCAAGTAGGAAAAAGCGTATAGTTCCAGTGGTGGTGGCAGTGATTGTGGTGGCTGCAGTGGTTTCATTCATTATCCTCGTGGCTATAGCTGGCTGGTTCTTCATTAAGAAAAAAAGAGGATTTGAAGACAATGAAGCTGCTGTACTTAGGATTCAAAATCAAGAGAATGAACTTGAGATGCCATTATTTGATATCGCTACGATTGAAGCTGCCACAGATAACTTCTCCTTTTCTAGTAAGATAGGAGAAGGTGGTTTTGGCCCCGTATATAAGGGGAAGCTTCCATCAGGGCAGGAAATTGCTGTGAAAAAATTGGCAGAGAGTTCTGGACAAGGTCTGCAAGAATTTAGAAATGAAATTCTTTTTATATCGCAGCTTCAACATCGAAATCTTGTCAAGATTCTTGGCTTTTGCATTCATAGGGAAGACACATTACTCGTCTATGAGTATATGCCAAATAAAAGTCTAGACTACTTCCTTTTTGATGACAAAAGGCGTTCTTTACTTGATTGGAAAACGAGAAGAGACATCATAATTGGGATAGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGACTCCGAATAATACACAGAGATCTTAAAATTGCCAACATTTTGTTAGACAATGAAATGAATCCAAAAATTTCAGATTTTGGCTTAGCGCGTTTGTTCGGTGAAGATCAAAATTATATAAGAACTAAAAGAGTTGTTGGGACCTATGGTTACATGTCACCGGAATATGCAATCGATGGATATTTTTCATTGAAATCAGACGTTTTTAGCTTTGGAGTGATGCTCTTGGAAATAATAAGTGGCAAGAAGAATAGAGGGTTTTTCCATCCAGATCATCAATTAAATCTTCTTGGACACGCATGGAAACTTTGGAATGAAGGAAAAGCTTTGGAGTTTGTAGATGAAACTTTGCACAATGAATTCCAAGAATTAGAAGCACTAAAGCATATTCAAGTAGGTCTTTTGTGTGTCCAACAAGACTCAAAAGAAAGACCAATTATGTCATCAATAGTTGCAATGTTGGAAAATGATAACATGCAACTGACTAATCCTGGACAACCTGGATTCTTTACTGAAAGAGTTGTGTCTGAGACTAATTCAACAATAAGTGACAAAATGGACTCAACCAAAAATAAGGTAACTGTTACAATAATAGAGGGTCGTTAA 2460 38.7 MRTLMIQRCNLLPLFLCFTMMSLFSEKSTAADSLRAEQSMNENQTLISLAQKFELGFFRTQNSKFLYLGIWYKNIPNSIVWVANRDNPIVNSSGLLTFRQGKLVVINQTDDVLWSSNSEKAVKNPVLKLLDTGNLVLLESGSAELVWQSFDYPSHTMLPGMKLGWDLKAGLNRKLTSWKTSDDPSSGEFTFGIDPDGLPQFVIRKGDNVTYRSGPWYSGRVSGGPSFIEIETYKPEFIQTSDEVYYSNEPFVNIFARIVIDEDGYVLIESWDDSLKNWNQWFRYEGDLCDHYGFCGESGVCHISPTAICECVVGFEPKEPEKWGTESWLDGCVRKDPEICRNGEGFRMLRGVKLPDSSGKFVNVNKSAQDCETDCLNNCSCLAYGIMNDPKTGKSCVTWFKELIDIRYVTKYGEDLYVRVAASELESSRKKRIVPVVVAVIVVAAVVSFIILVAIAGWFFIKKKRGFEDNEAAVLRIQNQENELEMPLFDIATIEAATDNFSFSSKIGEGGFGPVYKGKLPSGQEIAVKKLAESSGQGLQEFRNEILFISQLQHRNLVKILGFCIHREDTLLVYEYMPNKSLDYFLFDDKRRSLLDWKTRRDIIIGIARGLLYLHRDSRLRIIHRDLKIANILLDNEMNPKISDFGLARLFGEDQNYIRTKRVVGTYGYMSPEYAIDGYFSLKSDVFSFGVMLLEIISGKKNRGFFHPDHQLNLLGHAWKLWNEGKALEFVDETLHNEFQELEALKHIQVGLLCVQQDSKERPIMSSIVAMLENDNMQLTNPGQPGFFTERVVSETNSTISDKMDSTKNKVTVTIIEGR 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4079324 4082942 - evm.model.ptg000005l.924 HCH3g0593 541321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0593 819 SMART serkin_6 501 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0593 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 782 - -
HCH3g0593 819 SMART ntp_6 341 420 IPR003609 -
HCH3g0593 819 Pfam Domain of unknown function (DUF3403) 774 819 IPR021820 GO:0004674(InterPro)
HCH3g0593 819 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
HCH3g0593 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
HCH3g0593 819 SMART blect_4 37 153 IPR001480 -
HCH3g0593 819 ProSiteProfiles Bulb-type lectin domain profile. 31 150 IPR001480 -
HCH3g0593 819 Gene3D Phosphorylase Kinase; domain 1 463 576 - -
HCH3g0593 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 576 - -
HCH3g0593 819 ProSiteProfiles Protein kinase domain profile. 501 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0593 819 Pfam PAN-like domain 340 406 IPR003609 -
HCH3g0593 819 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
HCH3g0593 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 184 IPR036426 -
HCH3g0593 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 150 - -
HCH3g0593 819 CDD STKc_IRAK 507 774 - -
HCH3g0593 819 Gene3D - 25 150 IPR036426 -
HCH3g0593 819 PIRSF SRK 2 819 IPR024171 GO:0004674(InterPro)
HCH3g0593 819 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544(InterPro)
HCH3g0593 819 Gene3D Transferase(Phosphotransferase) domain 1 577 783 - -
HCH3g0593 819 Pfam Protein tyrosine and serine/threonine kinase 502 772 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0593 819 Pfam D-mannose binding lectin 79 179 IPR001480 -
HCH3g0593 819 CDD B_lectin 43 153 IPR001480 -
HCH3g0593 819 CDD PAN_AP_plant 341 421 - -
HCH3g0593 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0593 819 SUPERFAMILY Protein kinase-like (PK-like) 484 773 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0593 HCH-Chr3:4079324 HCH6g0716 HCH-Chr6:40611922 3.20E-204 dispersed
HCH3g0592 HCH-Chr3:4073130 HCH3g0593 HCH-Chr3:4079324 1.00E-290 tandem
HCH3g0593 HCH-Chr3:4079324 HCH3g0594 HCH-Chr3:4084554 8.20E-168 tandem
HCH3g0593 HCH-Chr3:4079324 HCH7g0202 HCH-Chr7:1396888 1.00E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81401 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0593 - - - 0.0