Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0594 ATGAAACTCATAAGAAATAGCTTTTCATGGCTCCATTTTCTTCTTCTTTTGAAGTTATCTATCAGCTCAAAAGATACAATAACATCAACCCAATTCATCAAAGATTCAGAAACTGTAAAATCCAATCTTGGGTTCTTTGAATTGGGTTTCTTTAGTCCTCCCAATTCTACCAATAGATATGTTGGGATTTGGGATAAAAGAGTTTCTGTTCAAACCATAGTTTGGGTAGCTAATAGAGATAAACCTCTCAAGACTCTATATGGGGTTTTTACCATCTCCAAAGATGGAAATCTTGTGGTATTAAACGAACACACTGATACTATTTGGAATTCCAATGTTTCTAATCCAACAGTGAACTCCAATGCCCATCTTTTAGATTCTGGAAATCTTGTTTTGCAAGATCCCACTTCTGGGATTGTCTTATGGGAGAGTTTCAAAGACCCTTCTGATAAATTCTTGCCTATGATGAAGTTTATATCCAATTCAAGAACGAAAGAGAAAGTCGGGCTCGTGTCATGGAAAAGCCCTTCTGATCCATCTATAGGAAGTTTCTCCTTTGGTATTGATCCTCTTAGTATTCCTGAAGTTTTCATTTGGAAAGAGGGTCTCCCTTATTGGAGGTCTGGTCCATGGGATGGTCAAGTTTTTATTGGGATACCTAATATGAATTCTGACTATCTTCATGGAGCTAATCTTGTTATAGAGAACCAAACTTACACTCTCTCTGTTGCTAATGCTAATGAGAATCAATTGTTTCTTTATTATTTGAATCCCAATGGGAATTTGGAAGAGATATACCGGGATATTGTGGAGCAGAAGTGGAAGATTAGGTGGTCTGCTCCTGAAACAGAATGTGATTTTTATGGAACATGTGGGGCATTTGGGCTCTGTAATTCGAAGACGACTCCGATATGTAGTTGTTTGAGAGGTTTTGAGCCAAAGAATGAAGGGGAATGGAAGAAAGGGAATTGGACAAATGGGTGTATGAGGAAATCATTGTTGCAGTGTGAGATGCACAACATCAGTGGGGGAATTGGTAGAGAGGATGTGTTTTTGAAATTGGAAATGATCAAAGTTCCAGATTTTGAAGCATGGTTCGTTGCTTCAGAAGATCAATGCCGAGTTCAGTGCTCGGTAAATTGTTCTTGTACTGCTTATGCTTATAGAACTGGGATTGGTTGCATGTTATGGATTGGAAACTTAATTGACTTACAGAAGTTTAACAATGGTGGAGCTGATGTTTATATCCGGGTGTCGTATTCAGATAAAGCTGATGAAACCACCAATGATATGAAAGCTACCATCATAGCTCCAGTGATAATAGGAACCTTTATACTTATTTGCTGCATATATTGCCTATGGAAAAGAAACAATCAGATCAAGTTTTTGTTTGGTCAAAGAGGAAGGTTTTTTAACTTTTCCAATGATGATGATACGCTACGCGATAAAATGAATCAAGTTAAGTTCCAGGAGTTGACTCTTTTTGATTATGAGAAACTGGCAACTGCAACAAACAACTTCCATTTGAATAACAAACTTGGTCAGGGTGGCTTTGGCCCAGTGTATAAGGGAACAACGATGGACGGACAGGAAGTAGCAGTAAAAACGCTTTCGAAAGCGTCTGGACAAGGGCTTGAAGAGTTTATGAATGAAGTAACTGTGATTTCAAAACTACAACATAGGAATCTTGTGCAGCTCCTTGGTTGTTGTGTGGAGGGAGAAGAGAAGATGCTAGTATATGAGTACCTGCCAAACAGAAGTTTGGATGCACTTATTTTTGATACAACGGAACGAGGAATGCTAGATTGGAGAAAAAGATTCAACATTATTGAGGGTATCGCTCGAGGTCTTCTTTATCTTCATAGAGATTCTAGGTTAAGGATCATTCATAGAGATCTAAAAGCCAGCAATATTCTATTAGACAAAGATTTGAATTCCAAAATTTCAGATTTCGGTACCGCTAAGATTCTTTGTGGAAATGAAGATCAAGCCAATACCACAAGGGTTGTAGGAACTTTTGGCTACATGTCTCCAGAATATGCAATGGAAGGCCAATTCTCAGAGAAATCTGACGTCTTTAGTTTTGGAGTTTTATTACTCGAAATTATTAGCGGAAGAAAAAATACGAGTTTCTATCACAATGAACATGCTTTAAGCCTTTTAGGATTTACATGGAAATTATGGATTGAAGATAATCTAGTTACTTTGATTGATCAAGCAATGTTCGAATCTCGCTACAAAACCGAGATTTTGAGGTGCGTTCATGTCGGACTGTTATGTGTTCAAGAATTCGCGAAAGATCGACCAAATATACCTACTATTCTTTCAATGCTCTATGATGAAATTACAAATCTTCCAACACCAAAGCAACCTGGGTTTAGCACTAGGCAAATTGTGATTCATGATGAAGAAAAATTGGAGCAAAGTCATGTTGGAACTTGTTCAGCAAACATGATCACAATTACTACATTTGAAGGTCGATAG 2484 37.64 MKLIRNSFSWLHFLLLLKLSISSKDTITSTQFIKDSETVKSNLGFFELGFFSPPNSTNRYVGIWDKRVSVQTIVWVANRDKPLKTLYGVFTISKDGNLVVLNEHTDTIWNSNVSNPTVNSNAHLLDSGNLVLQDPTSGIVLWESFKDPSDKFLPMMKFISNSRTKEKVGLVSWKSPSDPSIGSFSFGIDPLSIPEVFIWKEGLPYWRSGPWDGQVFIGIPNMNSDYLHGANLVIENQTYTLSVANANENQLFLYYLNPNGNLEEIYRDIVEQKWKIRWSAPETECDFYGTCGAFGLCNSKTTPICSCLRGFEPKNEGEWKKGNWTNGCMRKSLLQCEMHNISGGIGREDVFLKLEMIKVPDFEAWFVASEDQCRVQCSVNCSCTAYAYRTGIGCMLWIGNLIDLQKFNNGGADVYIRVSYSDKADETTNDMKATIIAPVIIGTFILICCIYCLWKRNNQIKFLFGQRGRFFNFSNDDDTLRDKMNQVKFQELTLFDYEKLATATNNFHLNNKLGQGGFGPVYKGTTMDGQEVAVKTLSKASGQGLEEFMNEVTVISKLQHRNLVQLLGCCVEGEEKMLVYEYLPNRSLDALIFDTTERGMLDWRKRFNIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDKDLNSKISDFGTAKILCGNEDQANTTRVVGTFGYMSPEYAMEGQFSEKSDVFSFGVLLLEIISGRKNTSFYHNEHALSLLGFTWKLWIEDNLVTLIDQAMFESRYKTEILRCVHVGLLCVQEFAKDRPNIPTILSMLYDEITNLPTPKQPGFSTRQIVIHDEEKLEQSHVGTCSANMITITTFEGR 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4084554 4087576 - evm.model.ptg000005l.923 HCH3g0594 541322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0594 827 Gene3D - 19 145 IPR036426 -
HCH3g0594 827 Pfam D-mannose binding lectin 72 174 IPR001480 -
HCH3g0594 827 Gene3D Phosphorylase Kinase; domain 1 472 582 - -
HCH3g0594 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0594 827 FunFam Liguleless narrow1 583 786 - -
HCH3g0594 827 FunFam receptor-like serine/threonine-protein kinase SD1-8 478 582 - -
HCH3g0594 827 SMART serkin_6 507 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0594 827 Gene3D Transferase(Phosphotransferase) domain 1 583 787 - -
HCH3g0594 827 Pfam Protein tyrosine and serine/threonine kinase 508 721 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0594 827 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
HCH3g0594 827 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544(InterPro)
HCH3g0594 827 CDD B_lectin 30 148 IPR001480 -
HCH3g0594 827 PIRSF SRK 1 827 IPR024171 GO:0004674(InterPro)
HCH3g0594 827 SMART ntp_6 346 418 IPR003609 -
HCH3g0594 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 791 - -
HCH3g0594 827 ProSiteProfiles Protein kinase domain profile. 507 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0594 827 Pfam PAN-like domain 347 404 IPR003609 -
HCH3g0594 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 212 IPR036426 -
HCH3g0594 827 SUPERFAMILY Protein kinase-like (PK-like) 493 801 IPR011009 -
HCH3g0594 827 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
HCH3g0594 827 CDD PAN_AP_plant 334 419 - -
HCH3g0594 827 CDD STKc_IRAK 513 778 - -
HCH3g0594 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 145 - -
HCH3g0594 827 SMART blect_4 30 148 IPR001480 -
HCH3g0594 827 Pfam Domain of unknown function (DUF3403) 781 827 IPR021820 GO:0004674(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0594 HCH-Chr3:4084554 HCH3g0596 HCH-Chr3:4100816 2.90E-298 dispersed
HCH3g0593 HCH-Chr3:4079324 HCH3g0594 HCH-Chr3:4084554 8.20E-168 tandem
HCH3g0594 HCH-Chr3:4084554 HCH3g0595 HCH-Chr3:4089088 3.60E-296 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81402 PF07714 PK_Tyr_Ser-Thr 4.20E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0594 - - - 0.0