Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0595 ATGAGCTTTTACTATCTTTTTCTTCATATTTTGCTTACATGCTTTTATTCAAAATTCTGCTTCTGCAGAGATACTATCACAACAACTGAATTCATCAAAGACCCTTCAACTATAGTATCCAGTAACAGTTTCTTTGAATTGGGTTTCTTCAGCCCTGTTAATTCAACGAATCGATATGTCGGAATTTGGCTTAAGCAAGGTTCTAGACCAACTGTTGTATGGGTAGCTAACAAAGACCAACCTCTCAAAGATACTTCTGGAGTTTTTACTATTTCCGACAACGGAAATCTTGTTGTTTTAGATGGACAGAGTAAAATTCTTTGGAATTCAAATATTTCTAGACCTGCAATCAACTCAAGTGCTCAGCTTTCGGATTCTGGCAACCTTGTTTTACAGGATTCTGCTTCTGGATTGATCATATGGGAGAGTTTCAAACACCTTTCCGATGCATTCTTGCCAACCATGAAATTTACAACCAACATAAAAACTAAAGAGAAAGTAGGATTGACGTCGTGGAAAAGTCCTTCTGATCCATCTAAAGGAAGTTTCTCCTTCGGCATCGATGCCATGAATATTGCTGAATCTTACATATGGAATGGCAGCAACATATGTTGGAGATCTGGTCCATGGAACAGTCAGTCCTTTATTGGAATACCCCGGATGGACTCTGTTTATCTCAGTGGTTTTAATCTTGTAATCGAAAATCAAACTACTTATTCTCTCTCGGTTGCTAATAGGAATGAGTTGTCTCAATATGAGTTTTATCACCTGACCTCACAAGGGAATTTTGAGCAACGGTACTGGGATTCTGTGGAGAAGGACTGGAAGATTAGATGGTCGGCTCTAGAAAATGAGTGTGATTTTTATGGTGCTTGTGGGGGATTTGGAATCTGTGATCCGAAAACGTCCCCGGTTTGCAGTTGTTTGAGAGGGTTTCAGCCGAAGAACGATGATGAATGGAATCAAGGAAACTGGACCAATGGATGTGTGAGAAAGACAATGTTGCAGTGTGAGAAGTTGAACAATGTCAGTGTTGAACAAGGCAATGAAGATGGGTTTTTGAAGATTGAAACAGTTAATTTGCCACACTTTGCAGAGTGGTCCAGTTCCTCTGCTTCTGCAGAAGATTGCAGACTTGAGTGCTTGGCTAATTGTTCCAATTCTGCATATGCATATGAAAATGGAATTGGTTGCATGTTATGGGCAGGAAGTTTAATCGACCTCCGAAAGCTCGATATTGGTGGAGGGGTTCTTTACCTAAGAATAACACATTCAGAACTAGATGATACCATAAAAGACATGAAAGGCGTTATAATAATAGCTTCAGTGATAGGAGGAACACTAATCATTATCTTCATCACATACTTCTCATGGAGAAGAATGATTCGCCAAAAAGCAAAAAAAGGGAGAAGCAAAAAGATGTCATTGTTTAAGGAAAAGGGAAATTTTTTTAGCTTGACGACGGATCGTAGAATTGGAGTCAATTTGAACCAAGAGTTGCCTACGCAACAATCCATGATACCCGAAAAGAATTGGAGCTTTTCACGTCTTCTTCTTCTTTCATTTACTTGTTTATGTTCAAGATTTTGCTTTGGCGGAGATACAATCACATCAACAAATTTCATCAAAGACCCTGCAACTATAATATCCAATGGCAGTAACTTTGAATTGGGTTTCTTCAACCCGATCAATTCTACGAACCGATATGTTGGAATTTGGTTCAAGCAAGTTTCTCAACCAAATGTAGCATGGGTAGCTAACAGAGACAACCCTCTTAAAGATAATTCCGGGGTTTTTACTATATCCAAGGATGGAAATCTTGTCGTCTTTGATGGACAGAATCAGATTCTCTGGTCTTCAAATATTTCAAATCCTGCAATCAATACAAGTGCCCGGATTTTAGATTCCGGTAACCTTGTTTTAGAAGATTCTGCTACTGGGGTTGTTATATGGGAGAGTTTCAAACACCCTTCTGATAAATTCTTGCCAGCAATGAAATTTATGACAAACACAAGAACTGGAGAGAATGTAGGGCTTACATCATGGAAGAACCCTTCTGATCCATCAACCGGAAACTTTTCCTTTAGCCTGGAAGTACTCAATATTCCTGAAGCTATCATTTGGAATGGCCATAATCTGTATTGGAGATCAGGTCCATGGAATGGTCAGTCCTTTATTGGGATACCCAACATGAATACAGTTTATCTTTTTGGATTTAATCTCGTAATTCAAGACCAAATTTACTCTCTCTTGATTGTTAATATTAATGAGACTGCACAATTATACTACTCATTAAACTCACAAGGGAATCTAGAGGAAAATTACTGGGATTTGGTAGAGAAGGAGTGGAAGGTTAGTTGGTCGGCTCTAAAAAATCCGTGTGACTTCTACGGTACTTGTGGGGCATTTGGAGTCTGTAATGCACAAAAGACACCAGTTTGCAGTTGTTTAAGAGGGTTTGAGCCGAAGGAGGAGAAATGGAATCGAGGAAATTGGACAGATGGATGTGTCAGAAAGACGCCTTTGCAGTGTGAGAAGATAAGTAACGCCAGCGCTGAACAAGGCAAGGAAGATGGATTTTTGAAAATGGAAATGGTTAAATTGCCACACTTTGCAGAGCGGTCCATTTCCTCTCTTTCATCAAATGATTGCAAAATGAGGTGCTTGGAAAATTGTCTGTGCACAGCTTATGCGTATGAAAGGGGTATTGGTTGCATGTTATGGAGTGGAAGCTTGATTGACATACAGCATTTTGACAGTGATGGAAATGGAGGTGTTCTTTACCTTCGACTGGCAAATACAGAATTAGGTACAATGTGGATCCCTAAAATACATGATGTAAAAAGCAAGAAAGCAATCATTATAGCAGTAGTCATACCAGGAACTCTAATTTTTATCATAATCACATACTTCGTATGGAGATGGATGATTGGCAAACACGAGAGAAATAGGAGGAGGAAAATGTTATCGCCTAGCGAAAAGGGAAAGTTTTCGGAGTTGACAAAGGAGGATAACAGTGGAGGTGATTTGAACCAAGTAAAACTCCAGGAGTTGCCACTTTTTTATTTTGAGAAGCTGGCAAATGCAACAAACAACTTTCATTCAAGTAATAAGCTTGGGCAGGGTGGCTTTGGTCCTGTATATAAGGGAAGAGTGTTAGATGGGCAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCCTCTAACCAAGGGATTGAAGAATTTACAAACGAGGTCATGGTGATTTCAAAACTACAGCATCGAAATCTGGTGCGCCTTCTTGGTTGCTGTGTTGAAAGAGAAGAGAAAATGCTAATATACGAGTATATGCCCAACCTAAGTTTGGATGCTTTGATATTTGACCCTTCTAAACAACGACTCTTGGATTGGAGAAAACGATTTAATATTATTGATGGAATTGCTCGAGGTCTTCTTTATCTCCATAGAGATTCGAGATTGAAAATCATTCATAGAGATCTAAAGGCAAGTAATATTCTTTTAGACCAAGACTTGAATCCCAAAATTTCAGACTTCGGTATGGCAAGAATTTTTGGTGGCAATGAAGTTCAAGCCAATACTTTAAGGGTTGTTGGAACTTATGGATATATGTCACCTGAATATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTCTATAGCTTTGGAGTTTTGTTGCTTGAGATTATTAGTGGGAGAAGAAATACAAGTTTTTACCACCATGAAGATGCCATAAGCCTATTGGGATTTGCATGGAAGTTGTGGAATGAAGACAATCTTAATCCTTTGATTGATCCAACAATATATGAACTGGGCTACCAAAGAGAGATTTTGAGGTGCATCCAAGTGGGACTCTTATGTGTTCAAGAATATACAAATGATAGGCCTAATGTCTCTACCATTATTTCAATGCTGAATAGTGAAATTGTAGATCTTCCTCCTCCAAAGCAACCTGGATTTATAGGTAGACCACTTGATAGTTCCACAGAGCCATCTCAACAAAATCTAGATCAACACTCTTTTAAGAATTCGAGCCCACCCTCTTGA 4044 38.9 MSFYYLFLHILLTCFYSKFCFCRDTITTTEFIKDPSTIVSSNSFFELGFFSPVNSTNRYVGIWLKQGSRPTVVWVANKDQPLKDTSGVFTISDNGNLVVLDGQSKILWNSNISRPAINSSAQLSDSGNLVLQDSASGLIIWESFKHLSDAFLPTMKFTTNIKTKEKVGLTSWKSPSDPSKGSFSFGIDAMNIAESYIWNGSNICWRSGPWNSQSFIGIPRMDSVYLSGFNLVIENQTTYSLSVANRNELSQYEFYHLTSQGNFEQRYWDSVEKDWKIRWSALENECDFYGACGGFGICDPKTSPVCSCLRGFQPKNDDEWNQGNWTNGCVRKTMLQCEKLNNVSVEQGNEDGFLKIETVNLPHFAEWSSSSASAEDCRLECLANCSNSAYAYENGIGCMLWAGSLIDLRKLDIGGGVLYLRITHSELDDTIKDMKGVIIIASVIGGTLIIIFITYFSWRRMIRQKAKKGRSKKMSLFKEKGNFFSLTTDRRIGVNLNQELPTQQSMIPEKNWSFSRLLLLSFTCLCSRFCFGGDTITSTNFIKDPATIISNGSNFELGFFNPINSTNRYVGIWFKQVSQPNVAWVANRDNPLKDNSGVFTISKDGNLVVFDGQNQILWSSNISNPAINTSARILDSGNLVLEDSATGVVIWESFKHPSDKFLPAMKFMTNTRTGENVGLTSWKNPSDPSTGNFSFSLEVLNIPEAIIWNGHNLYWRSGPWNGQSFIGIPNMNTVYLFGFNLVIQDQIYSLLIVNINETAQLYYSLNSQGNLEENYWDLVEKEWKVSWSALKNPCDFYGTCGAFGVCNAQKTPVCSCLRGFEPKEEKWNRGNWTDGCVRKTPLQCEKISNASAEQGKEDGFLKMEMVKLPHFAERSISSLSSNDCKMRCLENCLCTAYAYERGIGCMLWSGSLIDIQHFDSDGNGGVLYLRLANTELGTMWIPKIHDVKSKKAIIIAVVIPGTLIFIIITYFVWRWMIGKHERNRRRKMLSPSEKGKFSELTKEDNSGGDLNQVKLQELPLFYFEKLANATNNFHSSNKLGQGGFGPVYKGRVLDGQEIAVKRLSRASNQGIEEFTNEVMVISKLQHRNLVRLLGCCVEREEKMLIYEYMPNLSLDALIFDPSKQRLLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDQDLNPKISDFGMARIFGGNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVYSFGVLLLEIISGRRNTSFYHHEDAISLLGFAWKLWNEDNLNPLIDPTIYELGYQREILRCIQVGLLCVQEYTNDRPNVSTIISMLNSEIVDLPPPKQPGFIGRPLDSSTEPSQQNLDQHSFKNSSPPS 1347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4089088 4097509 + evm.model.ptg000005l.922 HCH3g0595 541323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0595 1347 SMART ntp_6 855 931 IPR003609 -
HCH3g0595 1347 SMART ntp_6 348 422 IPR003609 -
HCH3g0595 1347 ProSiteProfiles PAN/Apple domain profile. 844 932 IPR003609 -
HCH3g0595 1347 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
HCH3g0595 1347 Gene3D Transferase(Phosphotransferase) domain 1 1109 1310 - -
HCH3g0595 1347 MobiDBLite consensus disorder prediction 1325 1347 - -
HCH3g0595 1347 SUPERFAMILY Protein kinase-like (PK-like) 1018 1327 IPR011009 -
HCH3g0595 1347 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1109 1312 - -
HCH3g0595 1347 SMART serkin_6 1033 1309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0595 1347 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 529 654 - -
HCH3g0595 1347 FunFam Os04g0303100 protein 572 714 - -
HCH3g0595 1347 ProSiteProfiles Protein kinase domain profile. 1033 1309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0595 1347 CDD PAN_AP_plant 840 932 - -
HCH3g0595 1347 Gene3D - 530 655 IPR036426 -
HCH3g0595 1347 Gene3D - 19 145 IPR036426 -
HCH3g0595 1347 CDD PAN_AP_plant 333 422 - -
HCH3g0595 1347 FunFam Os04g0303100 protein 62 204 - -
HCH3g0595 1347 Pfam S-locus glycoprotein domain 715 823 IPR000858 GO:0048544(InterPro)
HCH3g0595 1347 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544(InterPro)
HCH3g0595 1347 Pfam Protein tyrosine and serine/threonine kinase 1035 1244 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0595 1347 SMART blect_4 29 147 IPR001480 -
HCH3g0595 1347 SMART blect_4 539 657 IPR001480 -
HCH3g0595 1347 Gene3D Phosphorylase Kinase; domain 1 1009 1108 - -
HCH3g0595 1347 MobiDBLite consensus disorder prediction 1314 1347 - -
HCH3g0595 1347 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 144 - -
HCH3g0595 1347 Pfam PAN-like domain 349 408 IPR003609 -
HCH3g0595 1347 Pfam PAN-like domain 855 915 IPR003609 -
HCH3g0595 1347 CDD STKc_IRAK 1039 1305 - -
HCH3g0595 1347 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 522 1318 - -
HCH3g0595 1347 SUPERFAMILY alpha-D-mannose-specific plant lectins 582 688 IPR036426 -
HCH3g0595 1347 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 178 IPR036426 -
HCH3g0595 1347 CDD B_lectin 29 146 IPR001480 -
HCH3g0595 1347 ProSiteProfiles Bulb-type lectin domain profile. 533 654 IPR001480 -
HCH3g0595 1347 FunFam receptor-like serine/threonine-protein kinase SD1-8 1004 1108 - -
HCH3g0595 1347 CDD B_lectin 539 657 IPR001480 -
HCH3g0595 1347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1154 1166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0595 1347 Pfam D-mannose binding lectin 582 683 IPR001480 -
HCH3g0595 1347 Pfam D-mannose binding lectin 71 173 IPR001480 -
HCH3g0595 1347 ProSiteProfiles PAN/Apple domain profile. 337 424 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0858 HCH-Chr14:36383985 HCH3g0595 HCH-Chr3:4089088 2.20E-195 dispersed
HCH3g0591 HCH-Chr3:4065289 HCH3g0595 HCH-Chr3:4089088 4.20E-175 dispersed
HCH3g0595 HCH-Chr3:4089088 HCH6g0716 HCH-Chr6:40611922 6.00E-192 dispersed
HCH3g0594 HCH-Chr3:4084554 HCH3g0595 HCH-Chr3:4089088 3.60E-296 tandem
HCH3g0595 HCH-Chr3:4089088 HCH3g0596 HCH-Chr3:4100816 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81403 PF07714 PK_Tyr_Ser-Thr 7.70E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0595 - - - 0.0