Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0596 ATGAATTGTCAACAATCCATGAAACCCAAAAAGAATCGGTGCTTTTCATGTCATCTTGTTCTTCTTTCATTTGTTTGCTTTTGTTCAAGATTTTGCTTTGGCAAAGATACAATCACATCAACAAGTTTCATCAATGATTCTTCAACCATACTATCCAATGGCAGTAACTTTGAATTGGGCTTCTTCAACCCTCTCAATTCTACGAACCGATACGTCGGAATGTGGTTCAAGCAAGTTTCTACACAAGCTGTAGCATGGGTAGCTAACAGAGACAACCCTCTTAAAGATAATTCTGGAGTTTTTACTATTTCCAAGGATGGAAATCTTGTCGTCTTAGATGGACAGAATCAAACTCTCTGGTCTTCAAATGTTTCTAATCCTGGAATCAATACGAGGGCCCGGATTTTAGATTCTGGTAACCTTGTTTTAGAAGATTCTGCTTCTGGGATGGTCATATGGGAGAGTTTCAAACACCCTTCTGATAGAGTCTTGCCAAAAATGAAACTTATAACAAACACAAGAACTGGAGAGAATGTAAAGCTTACATCATGGAAGAGCCCTTCTGATCCATCTACGGGAAATTTTTCCTTCAGCCTGGATGTTCTCAATATTCCTGAACTTGTCGTTCGGAATGGGCATAACCCGTATTGGAGATCAGGTCCATGGAATGGTCAGTCCTTTAATGGCGTACCCAACATGAATTCTATTTATATCTTTGGATTAAATCTTGTAATTCAAGACCAAAGTTACTCTCTCTCGATTGCGAATATTAAAGAGACTGCACAAATATATTTCTTATTAAACTCACAAGGGAATTTGGAGGAAACTTACTGGGATTTTGAAGAGAATGAATGGAAACTTAGTTGGTCGTCTCTACAAACCCTGTGTGATATTTATGGTGCTTGTGGGACATTTGGAATCTGTAATGCACAAACGACCCCAGTTTGCAGCTGCTTAAAAGGGTTTGAGCCAAAGGAGGAGGAGGAATGGAATCGAGGAAATTGGAGTGATGGATGTGTGAGAAAGACACCGTTGCAGTGTGAGAAGTTGAATAATAATGTCAGCATTGAACAAGGCAAAGAAGATGGTTTTTTCAGAATGGAAATGGTTAAATTGCCACACTTTGCAGGATGGTCCAATTCCTCTCGTTCAACAGATGATTGCAGAATGCAGTGCCTGGAGAATTGTTTGTGCACAGCTTATGCATATGAAAATGGTATTGGATGCATGTTATGGAGAGGAAACTTAACTGATATACAAAAGTTTGATAGTGATGGAGGTGTTCTTTACCTTCGACTGGCATATACAGAATTCGATGGTGTAAAAAACAAGAAAGGAATTATCATCGCGTCAGTGATATCAGGAACACTAATCTTTATCATTTTCTTATACTTCTTAAGGAGATGGATGATTGGCAAACACGCACAGAGAAAGAGAAGACAGACAATGTTATCCTCTAATGAAAAGGGAAAATTTTCGGAGCTGAGAAGGGAGGATAAGAGTGGAGATGATTTGAACCAAGTCAAACTCCAAGAGTTACCTCTTTATGATTTCGAGAAGCTGGCAAATGCAACAAACAACTTTCATTTAAGTAATAAGCTTGGGCAGGGTGGCTTTGGTCCTGTATACAAGGGAAGATTGTTAGATGGGAAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCCTCAAATCAAGGACTTGAGGAATTTACAAATGAGGTCATGGTGATTTCAAAACTACAGCATCGGAATCTGGTGCGGCTTCTTGGTTGCTGTGTTGAGGGAGAAGAGAAAATACTAATATACGAGTACATGCCCAACCTAAGTTTGGACGCTTTGATATTTGACTCCTCTAAACAACAACTCTTGGATTGGAGAAAAAGATTTAATATCATCGATGGAATTGCTCGAGGTCTTCTTTATCTTCACAGAGATTCGAGATTGAAAATCATCCATAGAGATCTAAAAGCAAGTAATATTTTACTAGACCAAGACTTGAATCCCAAAATTTCAGACTTTGGTATGGCAAGAATCTTTAGTGGCAATGAAGTTGAAGTCAATACCGTTAGAGTTGTTGGAACTTATGGATATATGTCACCAGAATATGGAATGCAAGGTCAATTTTCAGAGAAATCAGATGTCTATAGCTTCGGAGTTTTATTGCTTGAAGTTATTAGTGGGAGAAGAAACACAAGTTTTTACCAACATGAACATGCCATAAGCCTATTGGGATATGCATGGAAATTGTGGAATGAAGACAATCTGAATCCTATGATTGATCCAACTTTAAATGAACAGCCCTTCCAAGCAGAGATTTTGAGGTGCATTCAAGTGGGACTCTTATGTGTTCAAGAACTTACAAATGATAGGCCTAATGTCTCTACCATTATTTCAATGCTAAATAGTGAAATTTTAGATCTTCCTCCTCCAAAGCAACCTGGATTTATTGGTAGACCACTTGATAGTCACACACAGCCATCTCAACAAACCATGAAACCCGTAAAAACTTGGTGCTTTTCAAGTCTACTTCTTCTTCTTCTTCTTTCATTTACTTGCTTCAGCAAAGATACAATCACATCAACAAAGGTCATCAAAGACCCTGCAACTATTCTATCCAATGGCGGTAACTTCGAATTAGGCTTCTTCAACCTTCTCAATTCTACAAACCGATATGTCGGAATTTGGTTCAAGCAAGGTTCTCTTCAGACTGTAGCATGGGTAGCTAACAGAGACAACCCTCTTAAAGATAATTCCGGAGTTTTCACTATTTCCAAGGATGGAAATCTTGTCGTCTTAGATGGATTGAATCAGACTCTCTGGTCTTCAAATGTTTCTAATCATGCAGTCAACACGAGGGCCCGGATTTTAGATTCCGGTAATCTCGTATTAGAAGATTCTGCTTCTGGGGTTGTTATATGGGAGAGTTTCAAACACCCTTCTGATATATTCTTGGCGACAATGAAACTAATCACAAACACAAGAACTGGAGAGATTGTAGAGCTTAGATCATGGAAGAATGCTTCTGATCCATCAACAGGAAATTTTTCCTTGAGCCTGGAGGTTGTCAATATTCCTGAACTTGTCGTTAGGAATGGTGGTGACCCGTATTGGAGATCAGGTCCATGGAATGGTAATTCTTTTATTGGAATACCCGACATGAATTCTGTTTATCTCTCCGGGTTTAATCTCATAATTCAAGACCAACTTTCTACTTTCTCGGTTGCTAATATCAGTGAGACCGCAAAAATATATTACTCATTAAACTCACGAGGGAATGTGGAGGAAACTTACTGGGATTTTGCAGAGAATGAATGGAAGGTTACATGGTCCGCGCTAGAAAACCCGTGTGATTTTTACGGGGCTTGCGGGGCATTTGGAGCCTGTAATCCAAAAACAACCCCGTTTTGCAGTTGTTTAAAAGGGTTTGAGCCAAAGGAGAAGGAGGAATGGAATGGAGGAAATTGGAATGGTGGATGTGTGAGGAAGACGCCATTGCAGTGTGAGAAGTTGAAAAATAACGCCAGCGACGAACTAGGGAAGGAAGATGGATTCATCAAAATGGAAATGGTTAAATGGCCACACTTTGCAGAGTTGTTAGATTCCTCTGATTCAGAAAGTGATTGCCGAATGAAGTGCTTGGAGAATTGTTTATGCACAGCTTATGCATACGAAGAGAATATTGGTTGCATGTTATGGAGTGGAAACTTAATTGACATACTGCAGTTTGACAGACGTGGAGGTGTTTTTTACCTTCGCCTCGCGTATACAGAACTAATAGATGAAGTAAAAAGTAAGAAAGGCATTATTATAGCGGTAGTGATATCGGGAACACTAGTTTTAATCGTTATCATATACTTCTTATGGAGATGGATGATCCGCAAACAAGAGAGAAAGAGAAGACAGACAATGTTCTCGTCTAATGAAAAAGGGAATTTTTTGGAGTTGACAAAGGAGGATAAGAGTGAAGATGATTTGAACCAAGTTAAACTCCAAGAGTTACCTCTTTTTGATTTTGAGAAGCTGGCAAATGCAACAAACAACTTTCATTCAAGTAATAAGCTTGGACAGGGTGGCTTTGGTTCTGTATACAAGGGAAGACTGTTTTATGGGCAGGAAATAGCAGTAAAGAGGCTTTCAAAAGCCTCTCATCAAGGATTTCAAGAATTCACAAACGAGGTCATGGTTATTTCAAAACTTCAGCATCGAAATCTGGTGCGGCTTCTTGGTTGCTGTGTTGAAGGAGAAGAAAAAATGTTAATTTATGAGTACATGCCAAACCTAAGTTTGGATGCATTGATTTTTGACTCCTCGAAACAAAAACTCTTGGATTGGAGAAAAAGATTTAATATTATCGATGGAATTGTTCGAGGTCTCATTTATCTTCATAGAGATTCGAGATTGAAAATCATTCATAGAGATTTAAAAGCAAGTAATATTCTACTGGATCAAGCCTTTAATCCCAAAATTTCAGACTTTGGCATGGCAAGAATCTTTGGTGGCGATGAAGTTGAAGCCAATACTGTTAGGGTTGTTGGAACTTATGGATATATATCACCAGAATATGGAATGCAAGGTCAATTTTCAGAAAAGTCAGATGTCTATAGCTTCGGAGTCTTGTTGCTTGAAATTATTAGTGGGAGGAGAAATACAAGTTTTTACCAACATGAACATGCTCTAAGCCTATTGGGATTTGCATGGAAGTTGTGGAATGAAGACAATCTGAATCCTTTGATTGATCCAACACTATATGAAGTGCAGTACCAAGCAGAGATTTTGAGGTGCATCCAAGTGGGACTCTTATGTGTTCAAGAATATACAAATGACAGGCCTAATGTCTCAACCATTATTTCAATGCTGAATAGTGAAATTGTAGATCTTCCTTCTCCAAAGCAACCTGGCTTTATTGGTAGACCACTTGATACTTACACACAGCCATCTCAACAAAATCTAGATCAACACTCTGTAAATGCTGTTACAGTGACCACGGTCGTAGGTCGATAG 4998 38.84 MNCQQSMKPKKNRCFSCHLVLLSFVCFCSRFCFGKDTITSTSFINDSSTILSNGSNFELGFFNPLNSTNRYVGMWFKQVSTQAVAWVANRDNPLKDNSGVFTISKDGNLVVLDGQNQTLWSSNVSNPGINTRARILDSGNLVLEDSASGMVIWESFKHPSDRVLPKMKLITNTRTGENVKLTSWKSPSDPSTGNFSFSLDVLNIPELVVRNGHNPYWRSGPWNGQSFNGVPNMNSIYIFGLNLVIQDQSYSLSIANIKETAQIYFLLNSQGNLEETYWDFEENEWKLSWSSLQTLCDIYGACGTFGICNAQTTPVCSCLKGFEPKEEEEWNRGNWSDGCVRKTPLQCEKLNNNVSIEQGKEDGFFRMEMVKLPHFAGWSNSSRSTDDCRMQCLENCLCTAYAYENGIGCMLWRGNLTDIQKFDSDGGVLYLRLAYTEFDGVKNKKGIIIASVISGTLIFIIFLYFLRRWMIGKHAQRKRRQTMLSSNEKGKFSELRREDKSGDDLNQVKLQELPLYDFEKLANATNNFHLSNKLGQGGFGPVYKGRLLDGKEIAVKRLSRASNQGLEEFTNEVMVISKLQHRNLVRLLGCCVEGEEKILIYEYMPNLSLDALIFDSSKQQLLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDQDLNPKISDFGMARIFSGNEVEVNTVRVVGTYGYMSPEYGMQGQFSEKSDVYSFGVLLLEVISGRRNTSFYQHEHAISLLGYAWKLWNEDNLNPMIDPTLNEQPFQAEILRCIQVGLLCVQELTNDRPNVSTIISMLNSEILDLPPPKQPGFIGRPLDSHTQPSQQTMKPVKTWCFSSLLLLLLLSFTCFSKDTITSTKVIKDPATILSNGGNFELGFFNLLNSTNRYVGIWFKQGSLQTVAWVANRDNPLKDNSGVFTISKDGNLVVLDGLNQTLWSSNVSNHAVNTRARILDSGNLVLEDSASGVVIWESFKHPSDIFLATMKLITNTRTGEIVELRSWKNASDPSTGNFSLSLEVVNIPELVVRNGGDPYWRSGPWNGNSFIGIPDMNSVYLSGFNLIIQDQLSTFSVANISETAKIYYSLNSRGNVEETYWDFAENEWKVTWSALENPCDFYGACGAFGACNPKTTPFCSCLKGFEPKEKEEWNGGNWNGGCVRKTPLQCEKLKNNASDELGKEDGFIKMEMVKWPHFAELLDSSDSESDCRMKCLENCLCTAYAYEENIGCMLWSGNLIDILQFDRRGGVFYLRLAYTELIDEVKSKKGIIIAVVISGTLVLIVIIYFLWRWMIRKQERKRRQTMFSSNEKGNFLELTKEDKSEDDLNQVKLQELPLFDFEKLANATNNFHSSNKLGQGGFGSVYKGRLFYGQEIAVKRLSKASHQGFQEFTNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYEYMPNLSLDALIFDSSKQKLLDWRKRFNIIDGIVRGLIYLHRDSRLKIIHRDLKASNILLDQAFNPKISDFGMARIFGGDEVEANTVRVVGTYGYISPEYGMQGQFSEKSDVYSFGVLLLEIISGRRNTSFYQHEHALSLLGFAWKLWNEDNLNPLIDPTLYEVQYQAEILRCIQVGLLCVQEYTNDRPNVSTIISMLNSEIVDLPSPKQPGFIGRPLDTYTQPSQQNLDQHSVNAVTVTTVVGR 1665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4100816 4112486 + evm.model.ptg000005l.921 HCH3g0596 541324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0596 1665 ProSiteProfiles Protein kinase domain profile. 528 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 Gene3D Phosphorylase Kinase; domain 1 489 603 - -
HCH3g0596 1665 Pfam PAN-like domain 1179 1238 IPR003609 -
HCH3g0596 1665 Pfam PAN-like domain 360 419 IPR003609 -
HCH3g0596 1665 Pfam Protein tyrosine and serine/threonine kinase 529 796 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 Pfam Protein tyrosine and serine/threonine kinase 1349 1556 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 Pfam S-locus glycoprotein domain 1036 1144 IPR000858 GO:0048544(InterPro)
HCH3g0596 1665 Pfam S-locus glycoprotein domain 217 325 IPR000858 GO:0048544(InterPro)
HCH3g0596 1665 Gene3D Transferase(Phosphotransferase) domain 1 1423 1625 - -
HCH3g0596 1665 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
HCH3g0596 1665 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 813 - -
HCH3g0596 1665 CDD STKc_IRAK 534 800 - -
HCH3g0596 1665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1468 1480 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 CDD B_lectin 860 978 IPR001480 -
HCH3g0596 1665 ProSiteProfiles Bulb-type lectin domain profile. 854 975 IPR001480 -
HCH3g0596 1665 FunFam Liguleless narrow1 604 807 - -
HCH3g0596 1665 ProSitePatterns Protein kinases ATP-binding region signature. 1353 1375 IPR017441 GO:0005524(InterPro)
HCH3g0596 1665 CDD PAN_AP_plant 1162 1253 - -
HCH3g0596 1665 SUPERFAMILY alpha-D-mannose-specific plant lectins 902 1043 IPR036426 -
HCH3g0596 1665 SUPERFAMILY Protein kinase-like (PK-like) 1332 1645 IPR011009 -
HCH3g0596 1665 CDD STKc_IRAK 1353 1619 - -
HCH3g0596 1665 CDD PAN_AP_plant 343 434 - -
HCH3g0596 1665 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1423 1626 - -
HCH3g0596 1665 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 224 IPR036426 -
HCH3g0596 1665 FunFam Os04g0303100 protein 893 1035 - -
HCH3g0596 1665 SMART blect_4 41 159 IPR001480 -
HCH3g0596 1665 SMART blect_4 860 978 IPR001480 -
HCH3g0596 1665 ProSiteProfiles PAN/Apple domain profile. 1166 1254 IPR003609 -
HCH3g0596 1665 ProSiteProfiles PAN/Apple domain profile. 347 435 IPR003609 -
HCH3g0596 1665 SMART ntp_6 1178 1252 IPR003609 -
HCH3g0596 1665 SMART ntp_6 359 433 IPR003609 -
HCH3g0596 1665 ProSiteProfiles Protein kinase domain profile. 1347 1623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 CDD B_lectin 41 159 IPR001480 -
HCH3g0596 1665 ProSiteProfiles Bulb-type lectin domain profile. 35 156 IPR001480 -
HCH3g0596 1665 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 31 156 - -
HCH3g0596 1665 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1312 1422 - -
HCH3g0596 1665 SUPERFAMILY Protein kinase-like (PK-like) 513 827 IPR011009 -
HCH3g0596 1665 Pfam Domain of unknown function (DUF3403) 1620 1665 IPR021820 GO:0004674(InterPro)
HCH3g0596 1665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 850 975 - -
HCH3g0596 1665 FunFam Os04g0303100 protein 74 216 - -
HCH3g0596 1665 Pfam D-mannose binding lectin 902 1004 IPR001480 -
HCH3g0596 1665 Pfam D-mannose binding lectin 84 185 IPR001480 -
HCH3g0596 1665 SMART serkin_6 1347 1623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 SMART serkin_6 528 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0596 1665 FunFam receptor-like serine/threonine-protein kinase SD1-8 499 603 - -
HCH3g0596 1665 Gene3D - 848 976 IPR036426 -
HCH3g0596 1665 Gene3D - 32 157 IPR036426 -
HCH3g0596 1665 Gene3D Phosphorylase Kinase; domain 1 1321 1422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0021 HCH-Chr1:1453031 HCH3g0596 HCH-Chr3:4100816 1.90E-91 dispersed
HCH2g0774 HCH-Chr2:51395714 HCH3g0596 HCH-Chr3:4100816 8.20E-149 dispersed
HCH3g0594 HCH-Chr3:4084554 HCH3g0596 HCH-Chr3:4100816 2.90E-298 dispersed
HCH3g0596 HCH-Chr3:4100816 HCH6g0716 HCH-Chr6:40611922 2.90E-188 dispersed
HCH8g0479 HCH-Chr8:41013921 HCH3g0596 HCH-Chr3:4100816 6.70E-66 dispersed
HCH8g0480 HCH-Chr8:41023861 HCH3g0596 HCH-Chr3:4100816 2.40E-63 dispersed
HCH9g0131 HCH-Chr9:727678 HCH3g0596 HCH-Chr3:4100816 4.20E-71 dispersed
HCH3g0595 HCH-Chr3:4089088 HCH3g0596 HCH-Chr3:4100816 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81404 PF07714 PK_Tyr_Ser-Thr 3.70E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0596 - - - 0.0