Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0606 ATGAGAAGTAGTAGTTTCTATTCTACTGTTTCTAGAGTTCTCCATGAAAATCCTTCCCTCTCTCGCCTACTCGTTCTTGTCACCATCAGTGGTGGGAGTCTTGTAGCATATGCTGATGCAAGCCCAACAAATGGTGTAAGCAATATTGTATCAACAAAACCGGATTTGGTTGAGAAAAAGAAGAAGGTAGTAGTGCTTGGAACTGGTTGGGCAGGAACTAGTTTCTTGAAGAATATTAAAGATCCTTCCTATGAGATTCAAGTGGTATCACCTCGTAATTACTTTGCCTTTACCCCGTTATTGCCTAGCGTCACATGTGGTACGGTGGAAGCTCGCAGCATTGTCGAACCGATTCGCAGAATCGTTGGGAAGAAAAAAGTAGACATCCAATTCTCTGAAGCTGAATGTTACAAGATTGATGCTGAAAATAAGAAAATCTATTGTCGATCAAATCAAAATAACAATCTCAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATTTCGGTGGGAGCACAGGTTAATACATTCAATACTCCTGGTGTGGTGGAGAACTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATTCGAAGAACTGTAATAGATTGCTTCGAAAGGGCGAGTCTGCCTACCCTAAACAAAGAAGATAGGAAGAGAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCAACTGGTGTGGAATTTGCAGCAGAACTTCACGATTTTGTTAATGAAGACTTGGTCAGATTATATCCCGGACTTAAAGAATTTGTAAAAATTACTCTTCTTGAGGCAGGGGATCATATTTTGAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAGAAAAATTCCAAAGAGATGGTATTGATGTTAAGACAGGATCAATGGTGGTTAAGGTAACTGATAAAGAAATTTCTACCAAAGAAATGAAAAATGGAGAAATATCTTCAATGCCATACGGAATGACTGTATGGTCAACTGGTATTGGAACCCGCCCTTTCGTGAAGGATTTCATGGCACAGATTGGTCAGGCCAACAGACGTGCCTTAGCAACTGATGAATGGCTTCGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGATTGCGCCACTATAAATCAGCGAAGTGTCATAGAAGACATTGCCGCAATCTTTAGTAAAGCAGACAAAGACAATTCAGGAACACTTACAGTGAAAGAATTTCAAGAAGTCATTGCTGACATCTGTGAAAGATACCCCCAGGTGGAGCTGTACTTGAAGAATAAGAGAATGAACAACATTGTTGATCTTTTGAAGGGATCCAAAGGGGATGTGGCAAAAGAGTCTATAGAATTAAACATTGAAGAATTCAAATCAGCTCTTTCCCAAGTAGATTCTCAAATGAAAAACCTTCCAGCTACAGCACAGGTTGCTGCACAACAAGGTTCATATCTGGCTAATTGTTTTAACCGTATGGAAGAATGTGAAAATCAACCTGAAGGTCCTCTTAGGTTTAGGGGCTCCGGTCGCCACCGTTTTCGTCCCTTTAGGTACAAACATCTTGGACAATTTGCACCATTAGGAGGAGAGCAAACAGCAGCACAGCTTCCTGGTGATTGGGTCTCTATTGGCCATAGCTCTCAATGGCTTTGGTACTCTGTCTATGCAAGTAAGCAAGTGAGCTGGCGAACAAGGGCACTGGTGATAACAGATTGGACTAGACGTTTCGTTTTTGGAAGGGATTCCAGTCGCATATGA 1758 41.13 MRSSSFYSTVSRVLHENPSLSRLLVLVTISGGSLVAYADASPTNGVSNIVSTKPDLVEKKKKVVVLGTGWAGTSFLKNIKDPSYEIQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRRIVGKKKVDIQFSEAECYKIDAENKKIYCRSNQNNNLNGKKEFVVDYDYLVISVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNKEDRKRILHFAIVGGGPTGVEFAAELHDFVNEDLVRLYPGLKEFVKITLLEAGDHILNMFDKRITAFAEEKFQRDGIDVKTGSMVVKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPFVKDFMAQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRSVIEDIAAIFSKADKDNSGTLTVKEFQEVIADICERYPQVELYLKNKRMNNIVDLLKGSKGDVAKESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGSYLANCFNRMEECENQPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4172038 4176454 - evm.model.ptg000005l.911 HCH3g0606 541334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0606 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
HCH3g0606 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
HCH3g0606 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
HCH3g0606 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
HCH3g0606 585 Gene3D - 53 421 - -
HCH3g0606 585 Gene3D - 426 584 - -
HCH3g0606 585 SUPERFAMILY EF-hand 341 471 IPR011992 -
HCH3g0606 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
HCH3g0606 585 PANTHER NADH DEHYDROGENASE 49 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
HCH3g0606 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
HCH3g0606 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
HCH3g0606 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
HCH3g0606 585 SMART efh_1 387 415 IPR002048 GO:0005509(InterPro)
HCH3g0606 585 Coils Coil 447 467 - -
HCH3g0606 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 52 412 - -
HCH3g0606 585 SUPERFAMILY FAD/NAD(P)-binding domain 218 380 IPR036188 -
HCH3g0606 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0883 HCH-Chr14:36556643 HCH3g0606 HCH-Chr3:4172038 2.40E-70 dispersed
HCH2g0788 HCH-Chr2:51524667 HCH3g0606 HCH-Chr3:4172038 5.70E-256 wgd
HCH3g0606 HCH-Chr3:4172038 HCH7g0181 HCH-Chr7:1188157 1.90E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0606 K03885 - csv:101204145 1073.92