Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0609 ATGAATGATTTATTCTCGAGTTCGTTCAAGAAATACACTGATTTGAAGCAACAAGCATATTTGGATAACATGGAGGCAGGAAGTGAAAGTGTGAATTTAGACAGATTCTTTGAAGACGTTGAGAATGTAAAAGAAGACATGAAACAGGTAGAGAATCTGTATAAAAAACTACAACAATCAAATGAAGAGAGCAAGACTGTGCATAATGCAAAAACCATGAAAGAGCTTAGAGCTAGAATGGAGGCAGATGTTGAGCAAGTTCTGAAACGGGTTAAGTTGATAAAAGGAAAGCTTGAAGCTCTTGATCGTTCCAATGTAGCTCATAGGAGCCTTCCTGGATGCGGCCCCGGCTCGTCGGCTGATCGGACTAGAACCTCTGTCGTTGGCGGTTTGGGGAAGAAGCTTAAAGATGTTATGGATGATTTTCAAGGCCTGAGGGCTAGAATGAATGCTGAGTATAAAGAAACTGTCGAGCGAAGGTATTTCACAGTGACAGGGCAGAAAGCAAACGAAGAAACAATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGCTTTCTCCAAAAGGCTATTCAAGAGCAAGGGAGGGGTCAAATAATGGACACCATTTCAGAGATTCAAGAACGACATGATGCTGTGAAAGAGATAGAGAAGAATTTGATAGAACTGCATCAGATATTTCTGGACATGGCTGCTTTGGTAGAGGCACAAGGACACCAGCTCAATGACATAGAGAGCCATGTTGCACATGCAAATTCATTTGTAAGAAGAGGGACAGACCAGCTTCAAGAAGCTAGAGAGTACCAAAAGAGCTCTAGGAAATGGACTTGCATTGCTATAGGTTTGGGAGCTGTTCTCATTTTCCTTCTCCTCTTCCCTCTCTTATCATCCATTTTCCCTCACCTTCTTCTATGA 915 41.53 MNDLFSSSFKKYTDLKQQAYLDNMEAGSESVNLDRFFEDVENVKEDMKQVENLYKKLQQSNEESKTVHNAKTMKELRARMEADVEQVLKRVKLIKGKLEALDRSNVAHRSLPGCGPGSSADRTRTSVVGGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTDQLQEAREYQKSSRKWTCIAIGLGAVLIFLLLFPLLSSIFPHLLL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4190074 4191386 + evm.model.ptg000005l.908 HCH3g0609 541337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0609 304 Gene3D - 193 296 - -
HCH3g0609 304 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
HCH3g0609 304 SMART tSNARE_6 198 265 IPR000727 -
HCH3g0609 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH3g0609 304 Coils Coil 33 67 - -
HCH3g0609 304 Pfam SNARE domain 240 291 IPR000727 -
HCH3g0609 304 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
HCH3g0609 304 Coils Coil 70 90 - -
HCH3g0609 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH3g0609 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
HCH3g0609 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
HCH3g0609 304 CDD SNARE_syntaxin1-like 202 264 - -
HCH3g0609 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
HCH3g0609 304 PANTHER SYNTAXIN 36 285 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH3g0609 304 Gene3D - 33 160 - -
HCH3g0609 304 FunFam Syntaxin 132 196 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0609 HCH-Chr3:4190074 HCH9g1199 HCH-Chr9:19151029 1.40E-88 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0609 K08486 - csv:101217140 528.094