Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0634 ATGGCTTTAACAGCCCCTGGGCAGCTCAATGTTAACGAGTCCCCTACATGGGGATCTAGAAGCGTCGATTGCTTCGAGAAACTGGAGCAGATTGGCGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAACTTAAAACGGGTGAAATTGTTGCACTTAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCTATTACCGCCATACGAGAAATCAAAATTCTAAAGAAGCTTCATCACGAAAATGTGATCAAGTTAAAAGAGATTGTAACATCTCCAGGTCCTGAGAAGGATGAACTAGGGAAGCAAGATGGTAACAAGTATAAGGGGGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCCGATCGTCCCGGGATGAGATTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGCCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATCAAAGGCTCGAATCTGCTTATTGACAATGAAGGAAACCTGAAGCTTGCAGATTTTGGGCTTGCTCGGTCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTAATTACCTTATGGTACAGACCACCTGAATTGCTGCTTGGGTCAACAAGATATGGTCCCGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTTCCCGGAAAGGATGAGCCAGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAATTGGCCAGGGGTTTCTAAAATTCCATGGTATGCCAAATTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTTAGGCATTTTGATCGTCACGCTTTAGAGTTGTTGGAAAAGATGCTTACTCTTGATCCTTCTCAGAGGATATCTGCCAAGGATGCACTAGATGCGGAGTATTTTTGGGCAGATCCATTACCTTGTGATCCTAAGAGTTTGCCCAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACGGCAAAGCGACAGAAGTTGCAACATCCTCAGCAGCATGCACGCCTTCCACCAATCCAGCAGTCTGGGCAAGTACATGCACAGATGCGTCCGACATCTAACCAGCCTATCCATGGGTCTCAACAGCCAGTTGCAGGGCCTAGCCATCATTTTGGGAAGCCTCGTGGACCCCCGGGAGGTGCAGGTAGGTATCCCTCAGGTGGAAACCCCGCTGCTGGCTACAACCACCCAAATCGTGGTGGTCAAGGTGGGGGTGGTTATGGTAGTGGGCAATATGCTCAAGGACGAGGTGCACCCTATGGGTCCACTAACATGTCAGGAGCTGGTCCCCGAGGTGGAGCTGGTGGGGGATATGGCGTTGGAGCTCCAAATTATCCACAAAATGGTCCATATGGTGGTGGTAGTTCTGGTGCTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGAAACCAACAATATGGGTGGCAACAGTAA 1551 46.81 MALTAPGQLNVNESPTWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDELGKQDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYAKFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWADPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQQHARLPPIQQSGQVHAQMRPTSNQPIHGSQQPVAGPSHHFGKPRGPPGGAGRYPSGGNPAAGYNHPNRGGQGGGGYGSGQYAQGRGAPYGSTNMSGAGPRGGAGGGYGVGAPNYPQNGPYGGGSSGAGRGSNVMGGNRNQQYGWQQ 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4412700 4416715 - evm.model.ptg000005l.883 HCH3g0634 541362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0634 516 MobiDBLite consensus disorder prediction 373 401 - -
HCH3g0634 516 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
HCH3g0634 516 MobiDBLite consensus disorder prediction 500 516 - -
HCH3g0634 516 FunFam Cyclin-dependent kinase C-2 12 121 - -
HCH3g0634 516 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0634 516 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0634 516 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
HCH3g0634 516 SUPERFAMILY Protein kinase-like (PK-like) 18 331 IPR011009 -
HCH3g0634 516 FunFam Cyclin-dependent kinase C-2 122 364 - -
HCH3g0634 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0634 516 CDD STKc_CDK9_like 25 324 - -
HCH3g0634 516 PANTHER CELL DIVISION PROTEIN KINASE 25 324 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH3g0634 516 SMART serkin_6 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0634 516 MobiDBLite consensus disorder prediction 335 516 - -
HCH3g0634 516 MobiDBLite consensus disorder prediction 337 366 - -
HCH3g0634 516 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1131 HCH-Chr1:58817114 HCH3g0634 HCH-Chr3:4412700 5.60E-78 dispersed
HCH2g1468 HCH-Chr2:56207564 HCH3g0634 HCH-Chr3:4412700 2.00E-284 dispersed
HCH3g0634 HCH-Chr3:4412700 HCH6g0679 HCH-Chr6:39966838 1.60E-97 dispersed
HCH2g0905 HCH-Chr2:52532151 HCH3g0634 HCH-Chr3:4412700 4.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81406 PF00069 Pkinase 6.70E-75 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0634 K08819 - csv:101215918 915.99