Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0635 ATGACTTGCTGCTTTGGTTCCTCTACCGTGAGGAAGAAACGGATCTCGACTCGTGCTGATAAAGAGATAGCCAGTGACTTGATTGAGAATGTAAAACAATTCTCCTTCAATGAACTAAGATCTGCTACAGAGAATTTTCATTCAAACCATAGAATAGGACGCGGAGGTTTTGGAATTGTTTACAAGGGAACCTTAAGAAGTGGAGTAGAAGTAGCGGTGAAGAAACTTTCTGCGGCGTCTAAGCAAGGGGTGCTGGAATTTTTGACAGAGATCAAAATCATCTCTAATGTCAAGCATCCAAACCTTGTTGAGTTGATTGGATGCTGTGTTCAAGAAAGTAACCGGATTTTGGTCTATGAATATCTGGAAAATAATAGTCTTGACCATGCTCTTTTAGATCCTAAGAATACAAATATCAAACTGGATTGGGGAAAGAGGTCCTCTATTTGCATTGGTACTGCAAGGGGCCTTTCATTTCTTCATGAAGAAGTTGTTCCACATATTGTGCATAGAGACATCAAGTCCAGTAATATTCTCCTTGATGGAGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCTAAGCTTTTCCCAGATGATATTACTCATATTAGCACAAAAATTGCTGGAACAACTGGTTATTTGGCTCCTGAATATGCATTGGGAGGTCAACTAACCCTGAAGGCTGATGTGTATAGCTTTGGAGTCCTCATACTTGAAATAGTTAGTGGTAGACGCAGTGGGGCAGCTTACTGGGGAGGAGCATCAAAACTCTTGCTGGAATGGGTGTGGCAACTGCATGAAGAAGGAAACCTCTTAGAGATTGTGGATCCAGATCTAGGAGATTATCCTCATGGAGAAGTGCTTAGGTATTTGAAGGTGGCTCTTCTCTGCACCCAAGCAGCTGCAAATCGACGGCCATTGATGAGCCAAGTCCTTGACATGCTAACAAAGAAGATCAAGCTTAACGAGAAGCTGTTTACTGCCCCGGGCTTCTTCCGGGGCACGGGGCTTATTGAGATTCCTTCAACAAGCAAGAAGTCATCCACCACTGTTTCCACTAGTAATGAACTAAGCTCCGCCGCCATAACTATGACTCAAATCATCCCCAGATGA 1116 42.83 MTCCFGSSTVRKKRISTRADKEIASDLIENVKQFSFNELRSATENFHSNHRIGRGGFGIVYKGTLRSGVEVAVKKLSAASKQGVLEFLTEIKIISNVKHPNLVELIGCCVQESNRILVYEYLENNSLDHALLDPKNTNIKLDWGKRSSICIGTARGLSFLHEEVVPHIVHRDIKSSNILLDGDFNPKIGDFGLAKLFPDDITHISTKIAGTTGYLAPEYALGGQLTLKADVYSFGVLILEIVSGRRSGAAYWGGASKLLLEWVWQLHEEGNLLEIVDPDLGDYPHGEVLRYLKVALLCTQAAANRRPLMSQVLDMLTKKIKLNEKLFTAPGFFRGTGLIEIPSTSKKSSTTVSTSNELSSAAITMTQIIPR 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4419389 4423044 - evm.model.ptg000005l.882 HCH3g0635 541363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0635 371 FunFam cold-responsive protein kinase 1 17 121 - -
HCH3g0635 371 CDD STKc_IRAK 52 318 - -
HCH3g0635 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0635 371 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524(InterPro)
HCH3g0635 371 SUPERFAMILY Protein kinase-like (PK-like) 28 335 IPR011009 -
HCH3g0635 371 Gene3D Transferase(Phosphotransferase) domain 1 122 328 - -
HCH3g0635 371 Gene3D Phosphorylase Kinase; domain 1 15 121 - -
HCH3g0635 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 351 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH3g0635 371 SMART serkin_6 46 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0635 371 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
HCH3g0635 371 Pfam Protein tyrosine and serine/threonine kinase 48 312 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0635 371 ProSiteProfiles Protein kinase domain profile. 46 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0098 HCH-Chr11:1202102 HCH3g0635 HCH-Chr3:4419389 8.20E-118 dispersed
HCH3g0495 HCH-Chr3:3193458 HCH3g0635 HCH-Chr3:4419389 4.00E-55 dispersed
HCH3g0635 HCH-Chr3:4419389 HCH6g0575 HCH-Chr6:33799439 2.50E-95 dispersed
HCH3g0635 HCH-Chr3:4419389 HCH6g0639 HCH-Chr6:38236753 1.40E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81407 PF00069 Pkinase 1.20E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0635 - - - 0.0