Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0652 ATGGATTCACTCCCTCTCTTTCTCCTCTCTCTCTCCCTTCTCCTCTCTCTCTCCTCATCTCTTGATTTCGTCTTCAATGGTTTCAATTCATCAAACATCTCCCTTTACGGCAACGCCTCCATCGAATCCAACATCCTTACTCTCACCAACAAGACATCTTTCTCGATTGGTCGTGCTCTGTTTCCTTCTAAAATCCCCACAAAACATCCCAATTCCTCTCAAATCCTTCCCTTTTCCACTTCCTTCATCTTCTCCATGGCTCCTTACAGAAACACTCTCCCTGGCCATGGATTCGTCTTCATTTTCGTCCCCGTCACCGGAATCCGGGGAACTAGCTCTGCTCAGCATCTGGGGTTCTTAAATTTCACACTTAATGGAAATCCCAAGAACCATGTCTTTGGAATCGAGTTTGATGTCTTTGCTAATCAAGAATTTAATGACCCAAATGATAATCATGTCGGAATTGACTTGAATTCTCTTGCTTCTAATGTCACCGGAGATGCCGGGTTTTGGTCGAATCGCCGTCCGAATGGAACGGAGGAGTTCTTCAATGGAGTGAAGCTTAATAGTGGTGAGAATTTTCAAGTTTGGATTGATTATTCTGATTTTTTCATTAATATAACTATGGCTCCGGCGGGCATCAGAAGACCTCGCCGGCCTTTGATTAGTACTTTTCTCAATCTAACCGATGTTTTCGTCGACGAAATGTATATCGGGTTTACAAGTGCCACTGGACAATTAGTCCAGAGTCACAAGATTCTAGCTTGGAGTTTTAGTAATTCAAATTTCTCATTGAGTGAGAGTTTGATCACTACTGGTTTACCTTCCTTTGTTCTTCCAAAAGAACCGATCACTCGATCGAGAGCCTTCATTGCCGGAATTACTGTTGGTGGTTTTCTAATAGTATGCATCCTCGCGCTCCTCTCGGGAATTTTGATCGTGGGTCATCGGAGGAGAGCGAAAGCTCGAGCTGAAATGGAGGATTGGGAATTGGAGTATTGGCCGCATCGAATCACGTATCAAGAAATCGAATCAGCGACGAAAGGCTTTTCGGAGGGAAACGTGATCGGAATCGGAGGGAACGGGAAGGTCTACAAGGGAGTTTTGGCGGGAAATTCAGAGGTGGCAGTGAAGAGAATTTCCCACGAAAACGATGGAATGAGAGAGTTTTTAGCTGAAATTTCAAGCATTGGAAGATTAAAGCATAGAAATTTAGTGAGTTTGAGAGGATGGTGTAAGAAAGATAGAGGGAATTTCTTAGTGGTTTATGATTACATGGAAAATGGAAGTTTAGACAAATGGATATTCGATTGTGAACAGAGAAAGATGCTGAATTTTGAAGAAAGAATCAGAATTTTGAAAAACGTAGCTTCTGGAGTTTTGTATTTACACGAAGGATGGGAATCTAGAGTTCTTCATAGGGACATTAAAGCAAGCAATGTTTTACTCGATAAGGACATGAATGGAAGGCTTGGAGATTTCGGTTTGGCACGTGTGCACGGCCATGGACAAGTTGCAAACACGACCAAAGTTGTTGGAACCATGGGCTATATAGCACCTGAAATAGTCCGAACTGGAAGAGCATCGAGTCAAACAGACGTGTTTGGATTTGGAGTTTTGATTTTGGAAGTCATGTGTGGGAGGAGGCCTATTGAGGAAGGGAGATTGGCATTGGTTGATTGGGTTTGGGAGTTGTTGGTTGAAGGGCGATTGACGTCGGCCCTCGATGAGAGGCTACGGCGGAGCGAGGGTGAGGACGATGGCGGTTGGAGTGAGGAGGAAGTGGAGAGAGTGATGCATTTGGGGTTGCTTTGTGTGCATCCCGATGGACGCGCTCGGCCGACGATGAGACAAGTGGTGAAGGTTTTAGAAGGGAGAATTGAGGGTGAGGAAAGTGAGAATGAGAATGAGAATATGGATTCTTATTTACTTCAAAGATTGAAATCTCAAGAAATGTGGTCTGATTTTTCTCAGTATAAAACTCATCCAACTTTTGAAGATTTCTTGAAATCTGCTTCTACTTCCTTCTCTTGGTCTACTTCCATTGTCAGCGGCCGTTGA 2061 43.77 MDSLPLFLLSLSLLLSLSSSLDFVFNGFNSSNISLYGNASIESNILTLTNKTSFSIGRALFPSKIPTKHPNSSQILPFSTSFIFSMAPYRNTLPGHGFVFIFVPVTGIRGTSSAQHLGFLNFTLNGNPKNHVFGIEFDVFANQEFNDPNDNHVGIDLNSLASNVTGDAGFWSNRRPNGTEEFFNGVKLNSGENFQVWIDYSDFFINITMAPAGIRRPRRPLISTFLNLTDVFVDEMYIGFTSATGQLVQSHKILAWSFSNSNFSLSESLITTGLPSFVLPKEPITRSRAFIAGITVGGFLIVCILALLSGILIVGHRRRAKARAEMEDWELEYWPHRITYQEIESATKGFSEGNVIGIGGNGKVYKGVLAGNSEVAVKRISHENDGMREFLAEISSIGRLKHRNLVSLRGWCKKDRGNFLVVYDYMENGSLDKWIFDCEQRKMLNFEERIRILKNVASGVLYLHEGWESRVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVANTTKVVGTMGYIAPEIVRTGRASSQTDVFGFGVLILEVMCGRRPIEEGRLALVDWVWELLVEGRLTSALDERLRRSEGEDDGGWSEEEVERVMHLGLLCVHPDGRARPTMRQVVKVLEGRIEGEESENENENMDSYLLQRLKSQEMWSDFSQYKTHPTFEDFLKSASTSFSWSTSIVSGR 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4550617 4552677 + evm.model.ptg000005l.865 HCH3g0652 541380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0652 686 Gene3D Transferase(Phosphotransferase) domain 1 426 651 - -
HCH3g0652 686 SUPERFAMILY Protein kinase-like (PK-like) 328 624 IPR011009 -
HCH3g0652 686 FunFam L-type lectin-domain containing receptor kinase S.4 426 636 - -
HCH3g0652 686 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524(InterPro)
HCH3g0652 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 266 IPR013320 -
HCH3g0652 686 CDD STKc_IRAK 363 625 - -
HCH3g0652 686 Gene3D - 18 268 - -
HCH3g0652 686 ProSiteProfiles Protein kinase domain profile. 350 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0652 686 Pfam Protein kinase domain 351 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0652 686 CDD lectin_legume_LecRK_Arcelin_ConA 23 256 IPR001220 GO:0030246(InterPro)
HCH3g0652 686 Gene3D Phosphorylase Kinase; domain 1 313 425 - -
HCH3g0652 686 Pfam Legume lectin domain 21 263 IPR001220 GO:0030246(InterPro)
HCH3g0652 686 FunFam L-type lectin-domain containing receptor kinase V.9 19 268 - -
HCH3g0652 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0652 686 PANTHER - 28 627 IPR050528 GO:0005886(PANTHER)
HCH3g0652 686 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 312 425 - -
HCH3g0652 686 Coils Coil 620 640 - -
HCH3g0652 686 SMART serkin_6 350 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0652 HCH-Chr3:4550617 HCH9g0691 HCH-Chr9:4607767 8.00E-140 dispersed
HCH11g0269 HCH-Chr11:2444234 HCH3g0652 HCH-Chr3:4550617 1.10E-96 transposed
HCH3g0652 HCH-Chr3:4550617 HCH7g0145 HCH-Chr7:989427 1.80E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81408 PF00069 Pkinase 3.90E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0652 - - - 0.0