Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0654 ATGGAGGAAGATGATAATTCTTGGTTAAGAAGAACCAAATTTTCCAACACGATATGCCATCGTTGGGAAACTTTAGGATTGGCCTCCATTCCCGGCACCATTGAGCCACCACTCAAATCTTCTAATAGTAGGTCTAACCCTCCACAGATTGAGCAGAATCATGTTACAAACAAGCAGAGGTCTTTGTCTCCTCTTCCGGAGACTAAACTCTCGGACGCATTTAAGGAAGCCCGTAGTGATCAGAATCGATTCTCGTCTCCATGTCCTCGTAGGAGAGAAAAGAGCAAAGTGAAGGGAAAAAAGTTCCTCAACAAAGGAACTAAGGTACTCAATTCCTTGAACGAAGGGAAGTTAAGCCCTATAAGGCAACTTGCTTCATTGAAAGTCAGTGAGAAACCGAAGTTCTGGAAGGAGTTTTCGTGGGCCAAGTTTTTTGAGCATGGTGGAAGGAGGGTTACTGCTGTTGAAGCTGTGGATGAATTGACTGTTGATTTGTCTAAGTTGTTTCTTGGACATAAATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGAGTTTACAATGATGAAGCTGTTGCTGTTAAGATTATCAGTTTACCAGATGATGATGAAAATGGATCTCTTGCAGCTCGCTTAGTGAACCAATTCAGTAGGGAAGTAACCTTGTTATCCCGCCTCCACCATCGCAATGTCATAAAGTTGGTAACTGGTTGCAAAAGGCCACCAGTTTATTGCATCATCACTGAGTATCTGTCAGAGGGTTCCTTGAGGGCATATCTACACAGACTCGAAAAAAAAGCTCTCCCATGGCAAAAACTGATTGCAATCGCTTTGGATATTGCTCGCGGGATGGAATACATTCACTCTCAAGGCCTCATTCATCGGGATCTCAAACCAGAGAATGTTCTTATTGATCAACACTTTTGCCTAAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCACAATGTGATACATTGGCTGATGATCCTGGAACTTATCGTTGGATGGCACCCGAGATGATCAAACGTAAATCATACGGACGAAAGGTTGATGTTTACAGCTTTGGACTCATGCTGTGGGAAATGGTGGCTGGAACAATCCCTTATGATGATATGACTCCCATCCAAGCAGCTTTTGCAGTTGTGAATAAGAATATCAGACCAGTTATCTCGAGCACATGTCCACCGGCCATGGGGGCGTTGATCGAGCAGTGTTGGTCACAACAACCGGACAAGAGGCCGGAGTTCTGGCAGGTGGTGAAAGTATTGGAGCAATTTGAGAGTTCAGTTGGGCGTGATGGTTCATTGAGTCTTGTGCAAAATCCAAGTGGGCAAGATCACAAGAAAGGACTAATGCATTGGATACAGAAGCTTGGTTCTCAGTATTCTCAGACTTCTCCCATGCTCAAACCTAAATTCATATGA 1428 43.7 MEEDDNSWLRRTKFSNTICHRWETLGLASIPGTIEPPLKSSNSRSNPPQIEQNHVTNKQRSLSPLPETKLSDAFKEARSDQNRFSSPCPRRREKSKVKGKKFLNKGTKVLNSLNEGKLSPIRQLASLKVSEKPKFWKEFSWAKFFEHGGRRVTAVEAVDELTVDLSKLFLGHKFAYGAHSRLYHGVYNDEAVAVKIISLPDDDENGSLAARLVNQFSREVTLLSRLHHRNVIKLVTGCKRPPVYCIITEYLSEGSLRAYLHRLEKKALPWQKLIAIALDIARGMEYIHSQGLIHRDLKPENVLIDQHFCLKIADFGIACEEAQCDTLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLMLWEMVAGTIPYDDMTPIQAAFAVVNKNIRPVISSTCPPAMGALIEQCWSQQPDKRPEFWQVVKVLEQFESSVGRDGSLSLVQNPSGQDHKKGLMHWIQKLGSQYSQTSPMLKPKFI 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4562086 4563802 - evm.model.ptg000005l.863 HCH3g0654 541382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0654 475 Pfam Protein tyrosine and serine/threonine kinase 171 424 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 MobiDBLite consensus disorder prediction 30 66 - -
HCH3g0654 475 MobiDBLite consensus disorder prediction 35 66 - -
HCH3g0654 475 MobiDBLite consensus disorder prediction 76 95 - -
HCH3g0654 475 CDD STKc_MAP3K-like 177 424 - -
HCH3g0654 475 SMART serkin_6 168 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 SUPERFAMILY Protein kinase-like (PK-like) 157 425 IPR011009 -
HCH3g0654 475 PRINTS Tyrosine kinase catalytic domain signature 395 417 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 PRINTS Tyrosine kinase catalytic domain signature 286 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 PRINTS Tyrosine kinase catalytic domain signature 248 261 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 PRINTS Tyrosine kinase catalytic domain signature 351 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 PRINTS Tyrosine kinase catalytic domain signature 332 342 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 MobiDBLite consensus disorder prediction 76 92 - -
HCH3g0654 475 Gene3D Transferase(Phosphotransferase) domain 1 253 463 - -
HCH3g0654 475 FunFam serine/threonine-protein kinase HT1 253 444 - -
HCH3g0654 475 PANTHER SERINE-THREONINE PROTEIN KINASE 61 426 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH3g0654 475 ProSiteProfiles Protein kinase domain profile. 168 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0654 475 Gene3D Phosphorylase Kinase; domain 1 156 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0654 HCH-Chr3:4562086 HCH8g1383 HCH-Chr8:48541098 5.20E-90 dispersed
HCH14g0919 HCH-Chr14:36800481 HCH3g0654 HCH-Chr3:4562086 8.50E-192 wgd
HCH2g0899 HCH-Chr2:52483724 HCH3g0654 HCH-Chr3:4562086 3.70E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81409 PF07714 PK_Tyr_Ser-Thr 1.70E-59 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0654 - - - 0.0