Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0677 ATGCTTCTCTCACTCCTCTTCTTCTTCCTCCTCCTCACTACATTCTCTCTATCTCTAACTCAAGACGGTCTCTATCTTCACACCATCAAACTCTCTTTCGACGACCAAGACTCGTCTCTCCATTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTATGGCGTCACCTGCGATTCCAAGAACCAATCCGTTACCTCCCTCGACCTCTCCGATACCAATATCGCCGGCCCGTTTCCTTCTCTCATTTGCCGTCTTCAAAATCTCTCATTTCTCTCTCTCAATAACAACTCCATTAACGCTTCTCTTCCCTCCGATATCTCGTCTTGTACTTCTCTCCAACATCTCGACCTCGCTCAAAATCTCATCACCGGCTCTCTCCCGAGCTCTGTCGCTGACCTTCCCAATCTCCGGTACTTGGATTTCTCCGGCAATAATCTCTCCGGCGATATTCCGGCTAGTTTTGGTCGGTTTCAGAAACTCGAGGTTTTGTCTTTGGTTTTCAATTTACTCGATGGGCCGGTGCCGGGTTTTCTTAGTAATGTTAGTTCCTTGAAAATGTTGAATCTTTCTTATAACCCATTTCTGCCGGGGAGGATTCCCCCGGAGTTCGGGAATTTGACGAATCTTGAAGTGCTTTGGTTAACGCAGTGTAATTTAGTGGGTGAAATTCCTGATTCTTTGGGTCAGTTAAAAATGCTGACGGATCTTGATTTGGCGATTAATAATCTTCATGGGTTGATTCCGGAATCAGTAACGGAGTTAGTGAACGTGGTTCAGATTGAATTGTATAACAATTCGTTTTCCGGTGAGTTGCCGGTTGGGTTTTCGAATTTGACGAAATTGAGATTGTTTGATGCTTCGATGAATGAATTGAAAGGGGAGATTCCGGATGGGTTGTGTCGATTACCTTTAGAAAGTTTGAATCTTTATGAGAATCAGTTGGAGGGGAAGTTGCCGGAAAGTATAGCGGATTCGCCCGGATTGTATGATCTCAGGTTGTTTAGTAACCGGCTTTCGGGGGAGTTGCCGAGTAGTTTGGGGGAGAATTCGCCGTTGAGATGGATTGATGTTTCAAATAATCGGTTTTCAGGGAGGATTCCGGGGAATTTGTGTGGGAAAGGGGAGTTGGAGGATCTTTTGATCATTAATAATCAGTTTTCAGGGGAGATTCCGGTGGGTATAGGTGATTGTAAGAGTTTGATTCGGGTTCGATTGGGTTATAATCGGTTATCGGGTGAAGTTCCGGCGCAATTCTGGGGGTTACCTAATGTGTATCTAATGGAGTTGGTGAGCAATTCATTTTCTGGGAGAATTTCGAATACTATTGGGACTGCTGAGAATCTTTCCATTTTCATTATCTCTAAGAATGAGTTTTCGGGGTCGATACCGGAGGAGTTGGGGCTGCTGAATAATCTGGTGGAGTTTTTAGGCACTGATAATAAGCTCAATGGGTCATTACCCGGGAGTCTTGTGAATCTTAGACAGCTTGCAAGTTTGGATCTTCAGAATAATGAACTCTCTGGTAAGCTTCCTAGTGGAATCAAGTCATGGAAGAAGCTCAATGAGCTCAATTTAGCTAACAATAAGTTAACTGGTGAAATCCCTGAAGAAATTGGAGAGTTGCCTGTTCTCAATTACCTTGTTCTGTCTAGAAATATGTTTTCGGGGCCCCTTCCACTTGGATTACAGAATTTGAAGCTTAATTTGCTTAATTTATCGTATAATAACTTATCAGGTCGGCTTCCTCCATTTTTTGCTAAGGAAACTTACAGCAATTGCTTCTTGGGAAACCCGGATTTATGTGGACATTTGGAGAATTTGTGTGATAGTAAAGGAGAAGCTAGAAGAAACCAAGGATATCTTTGGTTGCTGCGTTCCATCTTTTTCCTTGCTGCGCTCGTGTTTGTTGCCGGAGTCATCTGGTTTTACCTCAAGTACAGAAAATTTAAGATGGCAAGGAAAGAAATGGAGAAGGCCAAGTGGACATTGGTATCTTTCCACAAACTGGATTTCAGTGAATATGAGATCTTGGATTTCCTTGATGAAGATAATGTGATAGGCAGTGGGGCCTCTGGTAAAGTATACAAGGTTGTGCTCAACAATGGCGAAGCCGTCGCCGTCAAGAAGCTTTATGGCGGGATGAAGAGAGAGGGCGAAAAGGGTGACATAGAGAAGGGTCAGGTTCAAGCTGATGGATTTGAAGCAGAGGTTGAAACTCTGGGAAAAATTAGGCATAAGAACATTGTTAAGTTATGGTGTTGCTGCATTACAAGAGAATACAAGCTGTTGGTCTATGAGTATATGCCCAATGGAAGCTTAAGCGATTTGCTTCATAGTAGTAAAAAAGGATTGCTGGATTGGCCAACGAGGTTTAAGATAGCTTTGGATGCTGCAGAAGGGCTTTCTTATCTTCATCACGATTGTGTTCCCGCAATTGTGCATAGAGATATTAAGTCTAACAATATCTTGTTGGATGGAGATCTCGGAGCACGAGTGGCCGATTTTGGGGTAGCTAAAGTGATCGATGCATCTGCGAAGGGGCCTAAATCCATGTCAGTCATAGCTGGATCTTGTGGTTACATTGCACCAGAGTATGCTTACACACTCAGAGTAAATGAGAAGAGCGACATTTACAGTTTCGGCGTCGTTATCCTCGAACTAGTCACGGGGAGGCTCCCGGTCGATCCCGAGTTCGGGGAGAAGGATTTGGTGAAATGGCTATGCTTCACATTGGATCAAGAAGGTGTAGAGAAAGTGATAGACCCCAAATTGGATTGTTGTTTCAAGGAAGAGATATGCAGGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTCCCCATCAACCGCCCATCAATGAGAAAGGTTGTCAAAATGCTGCAAGAAGTTGGAGGTGCAGAGAACCAGTCCAAAACTTACACAAAAGATGGGAAGTTGACTCCTTACTATTATGAAGAAGCTTCAGATCAGGGAAGTGTAGCTTAG 2988 44.01 MLLSLLFFFLLLTTFSLSLTQDGLYLHTIKLSFDDQDSSLHSWNDRDDTPCSWYGVTCDSKNQSVTSLDLSDTNIAGPFPSLICRLQNLSFLSLNNNSINASLPSDISSCTSLQHLDLAQNLITGSLPSSVADLPNLRYLDFSGNNLSGDIPASFGRFQKLEVLSLVFNLLDGPVPGFLSNVSSLKMLNLSYNPFLPGRIPPEFGNLTNLEVLWLTQCNLVGEIPDSLGQLKMLTDLDLAINNLHGLIPESVTELVNVVQIELYNNSFSGELPVGFSNLTKLRLFDASMNELKGEIPDGLCRLPLESLNLYENQLEGKLPESIADSPGLYDLRLFSNRLSGELPSSLGENSPLRWIDVSNNRFSGRIPGNLCGKGELEDLLIINNQFSGEIPVGIGDCKSLIRVRLGYNRLSGEVPAQFWGLPNVYLMELVSNSFSGRISNTIGTAENLSIFIISKNEFSGSIPEELGLLNNLVEFLGTDNKLNGSLPGSLVNLRQLASLDLQNNELSGKLPSGIKSWKKLNELNLANNKLTGEIPEEIGELPVLNYLVLSRNMFSGPLPLGLQNLKLNLLNLSYNNLSGRLPPFFAKETYSNCFLGNPDLCGHLENLCDSKGEARRNQGYLWLLRSIFFLAALVFVAGVIWFYLKYRKFKMARKEMEKAKWTLVSFHKLDFSEYEILDFLDEDNVIGSGASGKVYKVVLNNGEAVAVKKLYGGMKREGEKGDIEKGQVQADGFEAEVETLGKIRHKNIVKLWCCCITREYKLLVYEYMPNGSLSDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPAIVHRDIKSNNILLDGDLGARVADFGVAKVIDASAKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDPEFGEKDLVKWLCFTLDQEGVEKVIDPKLDCCFKEEICRVLNIGLMCTSPLPINRPSMRKVVKMLQEVGGAENQSKTYTKDGKLTPYYYEEASDQGSVA 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4775996 4779297 + evm.model.ptg000005l.840 HCH3g0677 541405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0677 995 Pfam Leucine Rich repeats (2 copies) 111 152 IPR025875 -
HCH3g0677 995 ProSiteProfiles Protein kinase domain profile. 681 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0677 995 FunFam Receptor-like protein kinase HSL1 304 611 - -
HCH3g0677 995 Gene3D Phosphorylase Kinase; domain 1 646 768 - -
HCH3g0677 995 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
HCH3g0677 995 SMART serkin_6 681 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0677 995 Pfam Protein kinase domain 684 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0677 995 Gene3D Ribonuclease Inhibitor 20 178 IPR032675 -
HCH3g0677 995 SUPERFAMILY L domain-like 353 588 - -
HCH3g0677 995 Gene3D Ribonuclease Inhibitor 256 326 IPR032675 -
HCH3g0677 995 Gene3D Ribonuclease Inhibitor 183 255 IPR032675 -
HCH3g0677 995 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
HCH3g0677 995 Gene3D Ribonuclease Inhibitor 327 612 IPR032675 -
HCH3g0677 995 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
HCH3g0677 995 SUPERFAMILY Protein kinase-like (PK-like) 675 961 IPR011009 -
HCH3g0677 995 Pfam Leucine Rich Repeat 184 207 IPR001611 GO:0005515(InterPro)
HCH3g0677 995 Pfam Leucine Rich Repeat 353 372 IPR001611 GO:0005515(InterPro)
HCH3g0677 995 Pfam Leucine Rich Repeat 305 324 IPR001611 GO:0005515(InterPro)
HCH3g0677 995 Pfam Leucine Rich Repeat 568 587 IPR001611 GO:0005515(InterPro)
HCH3g0677 995 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515(InterPro)
HCH3g0677 995 SUPERFAMILY RNI-like 67 420 - -
HCH3g0677 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 769 978 - -
HCH3g0677 995 FunFam Receptor-like protein kinase HSL1 664 768 - -
HCH3g0677 995 FunFam Leucine-rich receptor-like protein kinase family protein 200 298 - -
HCH3g0677 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 182 - -
HCH3g0677 995 SMART LRR_typ_2 86 110 IPR003591 -
HCH3g0677 995 SMART LRR_typ_2 134 158 IPR003591 -
HCH3g0677 995 SMART LRR_typ_2 279 303 IPR003591 -
HCH3g0677 995 SMART LRR_typ_2 518 542 IPR003591 -
HCH3g0677 995 SMART LRR_typ_2 494 517 IPR003591 -
HCH3g0677 995 SMART LRR_typ_2 207 231 IPR003591 -
HCH3g0677 995 SMART LRR_typ_2 182 206 IPR003591 -
HCH3g0677 995 Gene3D Transferase(Phosphotransferase) domain 1 769 986 - -
HCH3g0677 995 PANTHER OS04G0122200 PROTEIN 36 193 IPR051809 -
HCH3g0677 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0725 HCH-Chr12:4598042 HCH3g0677 HCH-Chr3:4775996 1.40E-84 dispersed
HCH3g0677 HCH-Chr3:4775996 HCH7g0287 HCH-Chr7:2022882 7.20E-158 dispersed
HCH9g1118 HCH-Chr9:13972819 HCH3g0677 HCH-Chr3:4775996 2.30E-59 transposed
HCH14g0944 HCH-Chr14:36975423 HCH3g0677 HCH-Chr3:4775996 6.30E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81410 PF00069 Pkinase 6.50E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0677 - - - 0.0