Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0684 ATGCCTGTCCCTTCTCTCCCAACTTCTCCCTCCCTCTCTCTTATCTGTTTTCTCACTCTGCTTCTCATGTTTCACAGACCATCCAAATGTGTAGCTAAACAACAAGCTCCTTCCAATGCCACCACCCGCCGCCACCGCCTCCTCTCCGTCGACTACTATGCCAAAACATGCCCTCACCTTGAGCAATTAGTATCTTCCATCACAACCCAACAGTTCAAAGAAGCCCCAGTTTCCGCTCCTGCAACAATCCGCCTCTTCTTCCATGATTGCTTTGTAGAAGGCTGTGATGGGTCAATACTGATATCAACAAAGCCGGGGAGCAAAATGGCAGCCGCGGCGGAGAGGGATGCAGAAGACAACAAGGGGCTGAGGGAGGAGGCGTTTGAAAGCATAGAGAAAGCCAAGGCCTTGGTCGAGAGCAAATGCCCTGGCATTGTGTCTTGTGCTGATATCTTGGCAATTGCAGCCAGAGATTTTGTCCACTTGACAGGAGGACCCTATTACCAAGTGAAGAAGGGAAGATGGGACGGAAAGATATCAATGACATCAAGAGTAATTTCCAATCTACCACGATCAAATTCCACCATCGCTCAGCTCCTCAAACTCTTCAATTCCAAAGGCCTCTCCGCCGCTGACCTCGTCGTACTCTCCGGCGCACACACAATCGGTTTCGCTCACTGCGAACACTTCCTAAACCGTCTGTACGATTACCGAGGAACAAAGCAACCGGATCCGGCGATCGACGGGAGGTTACTGAAAGCGCTGAAAATGTCGTGCCCTCGTTACGGGGGAAATACGGATATCGTAGCGCCGTTCGATGTAACGACGCCGTTCGTGTTTGATCATGCATATTATGGGAATTTGGAAGGGAAATTGGGATTGCTGGATACGGATCAAGCTTTGTTTTCTGATGGGGAGATGAAGGGTTTGGTATTAGGTTTGGCGAAGGATAAAGATAAGTTTTTTCGGGATTTTGCGATGGCGATGGAGAAGATGGGAGGGATTGGTGTGAAGAGGGGAAGGAAACACGGAGAGAAGAGGGTGGACTGTAGAGTTCATGGGAGTTAG 1068 49.72 MPVPSLPTSPSLSLICFLTLLLMFHRPSKCVAKQQAPSNATTRRHRLLSVDYYAKTCPHLEQLVSSITTQQFKEAPVSAPATIRLFFHDCFVEGCDGSILISTKPGSKMAAAAERDAEDNKGLREEAFESIEKAKALVESKCPGIVSCADILAIAARDFVHLTGGPYYQVKKGRWDGKISMTSRVISNLPRSNSTIAQLLKLFNSKGLSAADLVVLSGAHTIGFAHCEHFLNRLYDYRGTKQPDPAIDGRLLKALKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLEGKLGLLDTDQALFSDGEMKGLVLGLAKDKDKFFRDFAMAMEKMGGIGVKRGRKHGEKRVDCRVHGS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4827869 4830452 - evm.model.ptg000005l.833 HCH3g0684 541412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0684 355 PANTHER - 28 352 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601(InterPro)
HCH3g0684 355 ProSiteProfiles Plant heme peroxidase family profile. 47 354 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 ProSitePatterns Peroxidases proximal heme-ligand signature. 212 222 IPR019793 -
HCH3g0684 355 FunFam Peroxidase 51 199 - -
HCH3g0684 355 FunFam Peroxidase 190 332 - -
HCH3g0684 355 CDD secretory_peroxidase 48 352 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH3g0684 355 Gene3D - 51 352 - -
HCH3g0684 355 SUPERFAMILY Heme-dependent peroxidases 48 352 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Haem peroxidase superfamily signature 273 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Haem peroxidase superfamily signature 146 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Haem peroxidase superfamily signature 164 176 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Haem peroxidase superfamily signature 212 227 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 Gene3D Peroxidase, domain 2 190 332 - -
HCH3g0684 355 Pfam Peroxidase 66 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 287 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 271 286 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 327 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 145 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 211 223 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 126 139 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0684 355 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0311 HCH-Chr3:1968209 HCH3g0684 HCH-Chr3:4827869 2.30E-73 dispersed
HCH3g0684 HCH-Chr3:4827869 HCH8g1358 HCH-Chr8:48399689 9.10E-71 dispersed
HCH3g0684 HCH-Chr3:4827869 HCH7g0118 HCH-Chr7:769221 2.10E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0684 K00430 - csv:101216263 577.4