Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0702 ATGGAAACAGAGATAAAGAATAATAAGGATGAACCAGGGATTAAGCTTTTTGGAACAACAATAATGTTACAAAATCAGCAAGTAAAAGAAGAGGCAAAGAAATCAGATGAAGAAACGCCGGAGAAGAAGCCGGAAAAGATCATCGCTTGCCCTAGATGCAAGAGCATGGAGACTAAATTTTGTTACTTCAATAATTACAATGTAAACCAGCCGAGACATTTCTGTAAGGGCTGCCAGAGGTACTGGACAGCCGGAGGCGCACTCCGGAACGTCCCCGTTGGAGCCGGACGCCGTAAAGCAAAGCCGCCTTGTCGCGGTGGCTTCAGTGGGTTGCCGGAGGGTGTTGTCTTTGATGCTTCCGGAGTGCAACCGTTTGAGTTAGATGGGATGGTGGAGGAGTGGCATGTTGTGGCCACCGCCGGCGCGCCGGGCGGTTTCCGGCAGATATTGCCGGTTAAGAGGCGGAGGACCTGCCATGATGGTCAAACTTGTTGA 495 50.3 METEIKNNKDEPGIKLFGTTIMLQNQQVKEEAKKSDEETPEKKPEKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCRGGFSGLPEGVVFDASGVQPFELDGMVEEWHVVATAGAPGGFRQILPVKRRRTCHDGQTC 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4997147 4997641 - evm.model.ptg000005l.815 HCH3g0702 541430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0702 164 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g0702 164 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g0702 164 PANTHER CYCLIC DOF FACTOR 2 25 101 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g0702 164 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0702 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0702 HCH-Chr3:4997147 HCH9g1390 HCH-Chr9:45870992 1.50E-28 dispersed
HCH14g0987 HCH-Chr14:37225631 HCH3g0702 HCH-Chr3:4997147 8.20E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT1G29160 56.3 1.5e-45 179.5
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT1G29160 51.2 1.8e-40 162.5
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT2G34140 56.1 9.8e-47 183.3
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT2G34140 51.2 7.0e-37 150.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.0
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.2e-38 154.8
HCH3g1348 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 56.0 6.1e-37 151.8
HCH14g0246 . 1 215 C2C2-Dof Transcription Factor Family AT5G66940 51.3 6.9e-48 187.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT5G02460 64.4 3.0e-38 156.4
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.6 9.6e-37 151.4
HCH3g1348 . 61 134 C2C2-Dof Transcription Factor Family AT5G02460 87.8 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008695 0 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33332 PF02701 zf-Dof 4.80E-32 No_clan HCH TF