Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0702 ATGGAAACAGAGATAAAGAATAATAAGGATGAACCAGGGATTAAGCTTTTTGGAACAACAATAATGTTACAAAATCAGCAAGTAAAAGAAGAGGCAAAGAAATCAGATGAAGAAACGCCGGAGAAGAAGCCGGAAAAGATCATCGCTTGCCCTAGATGCAAGAGCATGGAGACTAAATTTTGTTACTTCAATAATTACAATGTAAACCAGCCGAGACATTTCTGTAAGGGCTGCCAGAGGTACTGGACAGCCGGAGGCGCACTCCGGAACGTCCCCGTTGGAGCCGGACGCCGTAAAGCAAAGCCGCCTTGTCGCGGTGGCTTCAGTGGGTTGCCGGAGGGTGTTGTCTTTGATGCTTCCGGAGTGCAACCGTTTGAGTTAGATGGGATGGTGGAGGAGTGGCATGTTGTGGCCACCGCCGGCGCGCCGGGCGGTTTCCGGCAGATATTGCCGGTTAAGAGGCGGAGGACCTGCCATGATGGTCAAACTTGTTGA 495 50.3 METEIKNNKDEPGIKLFGTTIMLQNQQVKEEAKKSDEETPEKKPEKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCRGGFSGLPEGVVFDASGVQPFELDGMVEEWHVVATAGAPGGFRQILPVKRRRTCHDGQTC 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4997147 4997641 - evm.model.ptg000005l.815 HCH3g0702 541430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0702 164 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g0702 164 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g0702 164 PANTHER CYCLIC DOF FACTOR 2 25 101 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g0702 164 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0702 HCH-Chr3:4997147 HCH9g1390 HCH-Chr9:45870992 1.50E-28 dispersed
HCH14g0987 HCH-Chr14:37225631 HCH3g0702 HCH-Chr3:4997147 8.20E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33332 PF02701 zf-Dof 4.80E-32 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0702 - - - 0.0