Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0713 ATGGAGAAGAAGGGCACCATTTTAATGCAAAGATATGAGCTTGGAAGATTGCTAGGACAAGGCACTTTTGCCAAAGTTTACCATGCAAGAAACCTCAAGTCGGGCCAAAGCGTAGCGATTAAGATCATCGACAAGGAGAAGGTTTTGCGCGGCGGCCTTATCGATCAGATCAAGCGAGAGATCTCGGTGATGCGGCTGGTGCGGCACCCTAATGTTGTGCAGCTCTATGAAGTCATGGCTAGCAGGAGTAAGATCTATTTTGCTATGGAATATGTTAGAGGTGGTGAACTTTTCAATAAAGTTGCTAAAGGGAAACTTAAAGAAGATGTTGCTCGTAAATATTTTCAGCAATTGCTTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTATCATAGAGATATCAAGCCTGAAAATCTTCTTCTTGATGAAAATGGTAACCTTAAGATCTCGGATTTTGGATTGAGTGCTTTGGCTGAATCTAGGAGGCAAGATGGCCTTCTTCATACCACTTGTGGAACTCCTGCTTATGTGGCTCCTGAAGTCATCAACAAGAAAGGATATGATGGTGCTAAAGCAGATATTTGGTCATCTGGAGTTGTTCTCTTTGTTCTATTGGCGGGTTATCTCCCTTTCCATGATACAAATCTCATGGAAATGTATAGGAAAATCTCCAGAGGGGAATTCAAATGTCCACAATGGTTTCATCCAGAAGTTCGTAAGCTTCTTTCAAGGATTCTTGATCCAAGTCCACACACGAGGATAAACATGTCCAAGCTCATGGAAAACTCCTGGTTCAAAAAGGGTTTCAAACTCATCATAGCAACTCCAAATCCACCTCAAAACAATGCACTCGTCTCTTCAACGAGCGACATCGAAGCCGCATTTGATGACAACATAACCGCAACCGAGGACGAAAAGAAAGTTGGGAGAAGCCCCTTCACCATGAGGCCAACCTGTTTCAATGCCTTCGACATCATCTCCCTCTCTCCCGGTTTCGATCTCTCCGGTTTGTTCGAAAAGGACATGAACGAGAGGCCGCAGTCCCGTTTCACGACGACTAAGTCGGCATCGACGATCGTGTCGAAGTTCGAGGAAATAGCAGAGATGGAGAGGTTCAAGGTGATGAAGAAAGATGGGATAGTAAAACTGCAAGGAAGCAAACAAGGGAGGAAAGGGCAGTTGGCAATAGACGCAGAGATATTCGAGGTGACACCATCTTTTCATGTGGTGGAGGTGAAGAAGACAGCGGGAGATACATTGGAGTACAGGCAATTCTACAACAAAGAGTTGAAGCCTTGCCTTAATGAGATTGTGTGGACTTGGGAAGGAAATCAACAGCAACCACAAGCTGTTTAG 1359 44.52 MEKKGTILMQRYELGRLLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRGGLIDQIKREISVMRLVRHPNVVQLYEVMASRSKIYFAMEYVRGGELFNKVAKGKLKEDVARKYFQQLLGAVDYCHSRGVYHRDIKPENLLLDENGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDTNLMEMYRKISRGEFKCPQWFHPEVRKLLSRILDPSPHTRINMSKLMENSWFKKGFKLIIATPNPPQNNALVSSTSDIEAAFDDNITATEDEKKVGRSPFTMRPTCFNAFDIISLSPGFDLSGLFEKDMNERPQSRFTTTKSASTIVSKFEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFHVVEVKKTAGDTLEYRQFYNKELKPCLNEIVWTWEGNQQQPQAV 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5105713 5107197 + evm.model.ptg000005l.804 HCH3g0713 541441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0713 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 433 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH3g0713 452 Pfam NAF domain 318 377 IPR004041 GO:0007165(InterPro)
HCH3g0713 452 FunFam Non-specific serine/threonine protein kinase 316 440 - -
HCH3g0713 452 CDD CIPK_C 322 436 - -
HCH3g0713 452 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
HCH3g0713 452 FunFam Non-specific serine/threonine protein kinase 3 91 - -
HCH3g0713 452 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
HCH3g0713 452 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0713 452 CDD STKc_SnRK3 11 265 - -
HCH3g0713 452 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0713 452 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165(InterPro)
HCH3g0713 452 Gene3D Kinase associated domain 1, KA1 317 441 - -
HCH3g0713 452 FunFam Non-specific serine/threonine protein kinase 2 308 - -
HCH3g0713 452 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0713 452 SUPERFAMILY Protein kinase-like (PK-like) 8 315 IPR011009 -
HCH3g0713 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0306 HCH-Chr10:2517667 HCH3g0713 HCH-Chr3:5105713 1.10E-152 dispersed
HCH12g0412 HCH-Chr12:2388446 HCH3g0713 HCH-Chr3:5105713 8.20E-133 dispersed
HCH3g0713 HCH-Chr3:5105713 HCH9g0825 HCH-Chr9:5774557 3.80E-175 dispersed
HCH7g1135 HCH-Chr7:44125502 HCH3g0713 HCH-Chr3:5105713 1.30E-32 dispersed
HCH9g0508 HCH-Chr9:3243154 HCH3g0713 HCH-Chr3:5105713 2.50E-21 dispersed
HCH2g1171 HCH-Chr2:54260952 HCH3g0713 HCH-Chr3:5105713 7.40E-35 transposed
HCH14g0994 HCH-Chr14:37275107 HCH3g0713 HCH-Chr3:5105713 6.90E-151 wgd
HCH2g0848 HCH-Chr2:52107973 HCH3g0713 HCH-Chr3:5105713 1.10E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81412 PF00069 Pkinase 6.70E-74 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0713 K07198 - csv:101206082 768.459