Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0724 ATGATGGTGTCTGATGTTCCTGTTTGCCACACTTGTGGTGAGCAAATTGGAGCTGATGCCAATGGTGAGGTTTTTGTTGCTTGTCATGACTGCAATTTTCCCATCTGCAAAGTTTGTGTTCAGTATGAGCTTAAGGAAGGCCGGAAAGTTTGCTTGCGATGCGGCTCTCCTTTTCACGAAAACTTACTGACCGATGCTGATACCAAGACGTCAGGAGATCGATCCACAATGGCACCTCATCTCAGTCATTCTCAGGATGTTGGGGTTCATGCTAGACATATCAGTAGTGTGTCAACAGTGGACAGTGAATTAAATGATGAATCTGGCAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAAAACAAAAAGAAAAAGCCTTCCATTAAGACTGAACAAGAAGCTCAAATTCCACCCCAACAGCAAATGGAAGAGAAACAGATTCCAGAGGAGGGTGCAGTTGCACATACATTTTCTAAGGCTACGCCAATTCCAAAGAGCAGACTTACACCATACCGGATAGTGATAATCATGCGATTGATCATTCTGGCTCTTTTCTTTCAATATCGAATAACGAATCCTGTTGATAGTGCTTTTGGCCTATGGCTCACTTCTATTATATGTGAGATCTGGTTTGCCTTCTCTTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCATCTCTAGGGAGACATACATAGACAGATTATCAGCCAGGTATGAAAGAGAGGGAGAGCCTTCCGAGCTCGCTGCGGTGGATTTTTTCGTGAGTACCGTTGATCCATTGAAAGAACCCCCACTAATCACTGCCAATACAGTGCTCTCAATCCTTGCTGTGGACTATCCTGTTGATAAAGTCTCCTGCTATGTATCTGATGATGGTGCAGCTATGCTCTCATTTGAATCTTTAGCCGAAACAGCCGATTTTTCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCTCTATCGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATTGACTATTTGAAGGATAAAGTTCAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAAAGAAACTATGAAGAATTTAAGGTACGAATCAATGCTTTGGTAGCAAAGGCTCAAAAAACACCAGATGAAGGCTGGTTCATGCAAGATGGGACAGCTTGGCCAGGAAATAATCCACGTGATCACCCAGGAATGATTCAGGTTTTTCTTGGAAATACTGGTGCCCAGGACATAGAGGGTAATGAACTTCCACGTCTGGTCTATGTGTCCAGAGAGAAGAGACCTGGTTACCAACACCACAAAAAAGCCGGTGCTGAAAACGCTCTGGTAAGAGTATCAGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGATTGTGATCACTACGTTAACAATAGCCAAGCTATTCGTGAGGCAATGTGTTTCTTGATGGATCCACAAGTAGGACGTGATTTATGTTATGTACAATTTCCTCAGAGGTTTGATGGCATTGACCGGAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAGGGGCTGGATGGCATTCAAGGACCAGTTTATGTAGGTACAGGTTGTGTTTTCAATAGACAGGCACTTTATGGATATGGGCCTCCTACTATGCCTACTTTATCTAAGGCGTCCTCTTCATCCTGCTCTTGGTGTGGCTGTTGTTCATGTTGCTGTCCTTCCAAGAAGATCTCAAAAGATCCATCTGAGATTCAACGAGATGCGAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGTTGATTTCTCAAATGAGCTTTGAGAAAACGTTTGGCTTGTCTACTGTATTTATCGAGTCTACGTTAATGGAAAATGGAGGAGTTGCAGAATCTGCCAATCCATCGTTATTGATCAAAGAAGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGACTGCTTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCTGTCTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCCATTAATCTGTCTGATCGTCTGCATCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATCTTTCTCAGTAGACATTGTCCTTTATGGTATGGATTTGCAGGTGGCAGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCATTTACTTCCCTCCCTCTCATTGCTTACTGCACATTACCTGCAATCTGCCTCCTGACCGGAAAATTTATCATACCAACGCTTTCAAACCTTGCAAGTGCACTTTTTCTTGGTCTCTTCATGTCCATCATTCTCACAAGTGTCCTCGAGCTGCGGTGGAGTGGAGTTAGCATTGAAGATCTATGGCGTAACGAGCAGTTCTGGGTCATTGGAGGTGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCTTAAAAATGTTAGCCGGAATCGACACCAACTTCACAGTTACTTCAAAGGCAGCTGATGACGCAGACTTCGGAGAGCTTTATATGGTGAAATGGACAACACTTTTGATTCCTCCTACCACCCTTATCGTCATCAATATGGTCGGTGTCGTCGCTGGCTTCTCCGATGCATTAAACGGTGGATACGAGGCCTGGGGACCTCTTTTCGGCAAGGTATTTTTCGCCTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACCCCGACGATCGTTGTTCTATGGTCAGTGTTGTTGGCCTCAGTTTTTTCACTTGTTTGGGTGAGGATAAACCCTTTTGTGAACCAAGTTGACAGTACAACCATTGCACAAAGCTGCATTGCCATAGATTGTTGA 2952 43.7 MMVSDVPVCHTCGEQIGADANGEVFVACHDCNFPICKVCVQYELKEGRKVCLRCGSPFHENLLTDADTKTSGDRSTMAPHLSHSQDVGVHARHISSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKKPSIKTEQEAQIPPQQQMEEKQIPEEGAVAHTFSKATPIPKSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPISRETYIDRLSARYEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETADFSRKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRNYEEFKVRINALVAKAQKTPDEGWFMQDGTAWPGNNPRDHPGMIQVFLGNTGAQDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTMPTLSKASSSSCSWCGCCSCCCPSKKISKDPSEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMENGGVAESANPSLLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASALFLGLFMSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTSKAADDADFGELYMVKWTTLLIPPTTLIVINMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVRINPFVNQVDSTTIAQSCIAIDC 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5180830 5186166 - evm.model.ptg000005l.793 HCH3g0724 541452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0724 983 Coils Coil 353 373 - -
HCH3g0724 983 FunFam Cellulose synthase 372 546 - -
HCH3g0724 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 175 950 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
HCH3g0724 983 MobiDBLite consensus disorder prediction 65 85 - -
HCH3g0724 983 Pfam Zinc-binding RING-finger 7 59 IPR027934 -
HCH3g0724 983 Pfam Cellulose synthase 255 974 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
HCH3g0724 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 269 776 IPR029044 -
HCH3g0724 983 MobiDBLite consensus disorder prediction 65 82 - -
HCH3g0724 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 404 551 IPR029044 -
HCH3g0724 983 MobiDBLite consensus disorder prediction 115 147 - -
HCH3g0724 983 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 552 581 IPR017896 -
HCH3g0724 983 SUPERFAMILY RING/U-box 3 60 - -
HCH3g0724 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0724 HCH-Chr3:5180830 HCH9g1098 HCH-Chr9:13073945 0.00E+00 dispersed
HCH3g0724 HCH-Chr3:5180830 HCH2g0720 HCH-Chr2:50892902 1.40E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0724 K10999 - csv:101208988 1863.2