Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0728 ATGGAAGGTAGCTTCAACAACCACCACTTGTATAATGGAGAACAAGAAGATAGTGATAAAAATCCAGAATCTCCACCTCCTTCCGTCGCCTTCAATGGTGAATCCAAGCTCAGCCCCACCGCCACCGCCGCCGCGAAAAAGGGCAGAAGAGGGATTAAGAAGAAAGTGGTGTCGGTGCCTATGAAGAATGAGAGCCATAGTTATAGTGGTAGTACAGCTCCTCCTTCTGATTCCTGGGCTTGGAGAAAGTACGGTCAGAAACCCATCAAAGGCTCTCCTTACCCCAGAGCTTATTATCGGTGCAGTAGCTCGAAAGGATGTCCTGCGAGGAAACAAGTGGAGAGAAGCCGTCTCGACCCAACTATGCTCGTCATCACCTATTCCTCGGAGCATAACCACTCTGGTCCGGTTTCCAGAAACAACAACCACCACCACCACTCCTCCACCGCCGTCTCAAAACCCGACTCACCCGAAACTCTCTCGGTTAAACCCGTACCCGAATTACTACCCGAAGAGAAATTCGTAGACGTAGGAGACGAGTCATTGATCACCAGCGATGAGTTCAGTTGGTTTGGTGAAATGGAAACGACGTCGTCGACGGTACTCGAGAGCTCACTTTTTTCCGAGAGAAGCGCGTTGGGAGATTCCGGTGATGTTGCCATGCTATTTCCGATGGGAGATGATGATGAATCACTCTTTGCCGACCTCGGCGAGTTGCCTGAGTGCTCAGTCGTGTTCCGGCACGGAGGAGGCCGAGGATTGCCTCTAGAGGAGCAGCCAGCTTCTCAGCGAAGAATCACTCCTTGGTACGGAACCGCCACCTGA 825 51.76 MEGSFNNHHLYNGEQEDSDKNPESPPPSVAFNGESKLSPTATAAAKKGRRGIKKKVVSVPMKNESHSYSGSTAPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERSRLDPTMLVITYSSEHNHSGPVSRNNNHHHHSSTAVSKPDSPETLSVKPVPELLPEEKFVDVGDESLITSDEFSWFGEMETTSSTVLESSLFSERSALGDSGDVAMLFPMGDDDESLFADLGELPECSVVFRHGGGRGLPLEEQPASQRRITPWYGTAT 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5211256 5212491 + evm.model.ptg000005l.789 HCH3g0728 541456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0728 274 MobiDBLite consensus disorder prediction 1 80 - -
HCH3g0728 274 Pfam WRKY DNA -binding domain 77 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0728 274 Gene3D WRKY domain 62 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0728 274 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0728 274 MobiDBLite consensus disorder prediction 62 76 - -
HCH3g0728 274 MobiDBLite consensus disorder prediction 130 156 - -
HCH3g0728 274 ProSiteProfiles WRKY domain profile. 70 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0728 274 MobiDBLite consensus disorder prediction 251 274 - -
HCH3g0728 274 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 243 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
HCH3g0728 274 MobiDBLite consensus disorder prediction 130 163 - -
HCH3g0728 274 FunFam WRKY transcription factor 65 54 136 - -
HCH3g0728 274 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0728 HCH-Chr3:5211256 HCH3g0894 HCH-Chr3:7511438 2.10E-30 dispersed
HCH14g1002 HCH-Chr14:37326500 HCH3g0728 HCH-Chr3:5211256 7.80E-50 wgd
HCH3g0728 HCH-Chr3:5211256 HCH7g0124 HCH-Chr7:825256 1.10E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33334 PF03106 WRKY 1.30E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0728 - - - 0.0