Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0732 ATGGCCGCGGCTGCGATATTCTCGTCTTTACGTCGGAGGAGATCGCCGTCGTTGGAAGCTTTCTTGGCCCCCGTTGACCTTAGTGATGTGGCTTTAGTTCAAACCCTTGCTTTAGTTGCTACCGAGATCGTTTCGAGGTTTTCGGAGGAGTCTTTCTTCTTCCAGCGGAAGAATTCGCGGTCTTTGATACGGAAAGTCGAGGTTTGCCTTGTGTTTTTGGATTTCTTGAAGGATACGGATGCGAGTTTGCCTCACACGGCGTTGCTTTGTTTGAAGGAGCTTTATTTGTTGCTGTATCGGTCTAAGATTCTTCTCGATTATTGCTCGCAGTCGAGTAAATTGTGGCTCTTGCTGCAGAACCTTTCGATTTCCGGGCATTTTCATGATTTGAATCTTGAGTTCTTGACTTTTTTGGATGTGTTTCCTTTGGAAGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTCTTGCAAAAGCAATTGAGAAGGACAAGGATGTTTGTTGACTCACGGGATGAGGCGTCGAGGACTCGCTTCCTATTGTTTCTTGATGAGTTTGAGAACGGGCAGATTCCCAATCCATTAGAAATGAGGAAGTTTTTTGTGGACAGGTTGAGAATTCGGAATGCAAAGTGCTGCAGAGCTGAAATTGAGTTTTTAGAAGAGCAGATTGTCAATCATGAAGGTGACATTGAGCCAACGGTAGCGGTGCTAAATGGTTTTGTTGCATTTACAAGATACAGCAGGTTTTTACTCTTTGGGTTTGAGGAAGACGAAATCGAATCAGGATCTGGGAATCAGAAGAAGCTGAGAAAGAATTTGATTACTCAAGAGATTGCCGAGACTTTTTTAACTATTCCAAAGGACTTTTGCTGCCCAATATCATTGGAGTTGATGAAAGATCCAGTGATAATTTCTACAGGCCAGACATATGATCGCAGTTCAATAGCCAGGTGGATGGAAGAAGGGCACTGCACTTGCCCAAAAACGGGGCAAATGCTCATCCATACTCGCCTTGTTTCAAATCGTGCTTTGCGAAATTTGATCATGCAATGGTGTGTTGCTTATGGAGTTCCTTATGAACCGCCTGAAGGGGTGGATGCATCAGCAGAAAGTTTTACAATGGCTTCCCCCACGCGAGCCGCACTCGAAGCGAACAGAGCGACAGCTGCAATTCTTATTCAACAGTTATCAGCTGGATCCGAAGATTCAAAGACCATTGCTGCACGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAAAACCGTGCGTTCATTGCAGAAGCTGGTGCCGTTCCCCATCTACAAAAGTTGCTGGCTTCTCCAAATCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTCAATCTCTCAATATATGATAAGAATAAAAGTCGGATTATGAGCGAGGTCGGGTGTTTAGGATCAATAACTGACGTGTTGAGATTTGGACATACTACAGAAGCAAGGGAAAATGCGGCAGCAACATTATTCAGTCTTTCTGCAGTGCATGACTACAAGAGGAGAATAGCAGAGGAGAGTGGTGCAGTTGAAGCCTTGGCAGGGCTGTTGAGAGATGGTACCCCGAGAGGAAAGAAGGATGCAGTGACAGCTTTATTTAATCTTTCAACCCACACAGATAATTGTGCGCGGATGATAGAAGCAGGGGCTGTAACAGCACTCGTAGGAGCATTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCATTGGTCTTGATTGTTAGACAACCTGTTGGAGCCGAAGCAGTGGGTAAAGAGGAGACAGCAGTGGCGGGGTTGATAGCAATGATGCGTTGTGGGACACCAAGAGGGAAAGAGAATGCAGTTGCAGCTTTGCTCGAGTTGTGCCGGAGTGGTGGAGCTGCCACAACCGAGCGAGTGTTCAAGGCTCCCGCATTGGCTGGGTTGCTCCAAACTCTCCTTTTTACTGGTACTAAGCGAGCAAGAAGAAAGGCTGCATCACTAGCTAGAGTGTTTCAAAGGTGTGAGCATGTAGCCATGCATTATGGTGGATTGGGTGTGGGTTATACATATGCAAGCAACTCAGCTCCAAACAGAGATTCAAGCTTCACTACCGATGTATCTGTGCCAATATCCATCTCAGTTCCCGTCGTTTAG 2148 46.18 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLALVATEIVSRFSEESFFFQRKNSRSLIRKVEVCLVFLDFLKDTDASLPHTALLCLKELYLLLYRSKILLDYCSQSSKLWLLLQNLSISGHFHDLNLEFLTFLDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDSRDEASRTRFLLFLDEFENGQIPNPLEMRKFFVDRLRIRNAKCCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFLLFGFEEDEIESGSGNQKKLRKNLITQEIAETFLTIPKDFCCPISLELMKDPVIISTGQTYDRSSIARWMEEGHCTCPKTGQMLIHTRLVSNRALRNLIMQWCVAYGVPYEPPEGVDASAESFTMASPTRAALEANRATAAILIQQLSAGSEDSKTIAAREIRLLAKTGKENRAFIAEAGAVPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSRIMSEVGCLGSITDVLRFGHTTEARENAAATLFSLSAVHDYKRRIAEESGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCARMIEAGAVTALVGALGNEGVAEEAAGALVLIVRQPVGAEAVGKEETAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTERVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYTYASNSAPNRDSSFTTDVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5260939 5263086 + evm.model.ptg000005l.785 HCH3g0732 541460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0732 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
HCH3g0732 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g0732 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
HCH3g0732 715 Coils Coil 212 232 - -
HCH3g0732 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g0732 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
HCH3g0732 715 SUPERFAMILY ARM repeat 394 673 IPR016024 -
HCH3g0732 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
HCH3g0732 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
HCH3g0732 715 SUPERFAMILY RING/U-box 277 361 - -
HCH3g0732 715 Gene3D - 386 666 IPR011989 -
HCH3g0732 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
HCH3g0732 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
HCH3g0732 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
HCH3g0732 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
HCH3g0732 715 FunFam RING-type E3 ubiquitin transferase 364 687 - -
HCH3g0732 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 360 IPR013083 -
HCH3g0732 715 Pfam U-box domain 288 355 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0562 HCH-Chr13:3999859 HCH3g0732 HCH-Chr3:5260939 3.70E-92 dispersed
HCH2g1094 HCH-Chr2:53820840 HCH3g0732 HCH-Chr3:5260939 1.00E-51 dispersed
HCH3g0732 HCH-Chr3:5260939 HCH9g0828 HCH-Chr9:5823482 4.80E-95 dispersed
HCH3g0732 HCH-Chr3:5260939 HCH3g0327 HCH-Chr3:2070976 1.50E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0732 - - - 0.0