Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0734 ATGACGTCAGGGACGAGAATGCCGACGTGGAGAGAGAGAGAGAACAATAAGAGGAGAGAGAGACGCCGGAGAGCTATCGCCGCTAAGATCTTTACCGGTTTGAGAATGTACGGTAACTATAAGCTTCCTAAACATTGCGATAATAATGAAGTTCTTAAAGCTCTTTGTCATGAAGCTGGTTGGACCGTTGAAGAAGACGGCACTACTTATCGTAAGGGATGCAAACCTATGGAATGCGACATCATGGGTGGATCGGCTTCTGCAAGTCCATGCTCATCTTACCAGCCAAGCCCACGTGCATCTTATAATCCAAGTCCTGCCTCTTCTTCCTTTCCCAGCCCCACCTCGTCCCATTACCATACTAAAGCCAATGATAATCCTGATGCTAATTCCCTCATCCCGTGGCTGAAGAACCTCTCGTCAGGCTCATCGTCATCTTCTTCCAGGATGCCCCATCATAATCTTTACATACCTGGTGGTTCCATAAGTGCTCCAGTCACCCCTCCCTCAAGTTCACCAACAGCTCGAACTCCCAGAACGAAAAATGATTGGGACAATCCAACTGCTGCTCCTGCCTGGGCTTCACAACATTTCTCATACTTACCTGCATCAACCCCACCAAGTCCCGGTCGTCAGGTTTTGCCTGATGCAGCATGGCTTGATGGTATTAGGATTCCCCAAAGTGGGCCATCATCTCCTACATTCACCCTTGTGTCAAGGAATCCTTTTGGATTCAAGGAGGCATTATCCGGTGCAGGGTCTCGAACATGGACTCCTGCACACAGTGGAACGTGCTCTCCTGCTATTCCTGCAGGCATTGATCATACTTCAGATGTCCCAATGACAGATGGAATCGCAGCGGAATTTGCCTTCGGTAGTTGTTCGATTGGATTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATTTGTATCTGATGATCTTGAACTTACACTGGGGAATTCAAGAACTAGGTAA 981 48.01 MTSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALCHEAGWTVEEDGTTYRKGCKPMECDIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPTSSHYHTKANDNPDANSLIPWLKNLSSGSSSSSSRMPHHNLYIPGGSISAPVTPPSSSPTARTPRTKNDWDNPTAAPAWASQHFSYLPASTPPSPGRQVLPDAAWLDGIRIPQSGPSSPTFTLVSRNPFGFKEALSGAGSRTWTPAHSGTCSPAIPAGIDHTSDVPMTDGIAAEFAFGSCSIGLVKPWEGERIHEEFVSDDLELTLGNSRTR 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5279590 5282390 + evm.model.ptg000005l.783 HCH3g0734 541462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0734 326 MobiDBLite consensus disorder prediction 164 184 - -
HCH3g0734 326 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 326 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
HCH3g0734 326 MobiDBLite consensus disorder prediction 140 187 - -
HCH3g0734 326 MobiDBLite consensus disorder prediction 88 125 - -
HCH3g0734 326 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 140 IPR008540 -
HCH3g0734 326 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0734 HCH-Chr3:5279590 HCH6g0624 HCH-Chr6:37496919 5.10E-129 dispersed
HCH3g0734 HCH-Chr3:5279590 HCH14g0542 HCH-Chr14:34338236 5.20E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33336 PF05687 BES1_N 2.50E-67 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0734 - - - 0.0