Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0734 ATGACGTCAGGGACGAGAATGCCGACGTGGAGAGAGAGAGAGAACAATAAGAGGAGAGAGAGACGCCGGAGAGCTATCGCCGCTAAGATCTTTACCGGTTTGAGAATGTACGGTAACTATAAGCTTCCTAAACATTGCGATAATAATGAAGTTCTTAAAGCTCTTTGTCATGAAGCTGGTTGGACCGTTGAAGAAGACGGCACTACTTATCGTAAGGGATGCAAACCTATGGAATGCGACATCATGGGTGGATCGGCTTCTGCAAGTCCATGCTCATCTTACCAGCCAAGCCCACGTGCATCTTATAATCCAAGTCCTGCCTCTTCTTCCTTTCCCAGCCCCACCTCGTCCCATTACCATACTAAAGCCAATGATAATCCTGATGCTAATTCCCTCATCCCGTGGCTGAAGAACCTCTCGTCAGGCTCATCGTCATCTTCTTCCAGGATGCCCCATCATAATCTTTACATACCTGGTGGTTCCATAAGTGCTCCAGTCACCCCTCCCTCAAGTTCACCAACAGCTCGAACTCCCAGAACGAAAAATGATTGGGACAATCCAACTGCTGCTCCTGCCTGGGCTTCACAACATTTCTCATACTTACCTGCATCAACCCCACCAAGTCCCGGTCGTCAGGTTTTGCCTGATGCAGCATGGCTTGATGGTATTAGGATTCCCCAAAGTGGGCCATCATCTCCTACATTCACCCTTGTGTCAAGGAATCCTTTTGGATTCAAGGAGGCATTATCCGGTGCAGGGTCTCGAACATGGACTCCTGCACACAGTGGAACGTGCTCTCCTGCTATTCCTGCAGGCATTGATCATACTTCAGATGTCCCAATGACAGATGGAATCGCAGCGGAATTTGCCTTCGGTAGTTGTTCGATTGGATTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATTTGTATCTGATGATCTTGAACTTACACTGGGGAATTCAAGAACTAGGTAA 981 48.01 MTSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALCHEAGWTVEEDGTTYRKGCKPMECDIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPTSSHYHTKANDNPDANSLIPWLKNLSSGSSSSSSRMPHHNLYIPGGSISAPVTPPSSSPTARTPRTKNDWDNPTAAPAWASQHFSYLPASTPPSPGRQVLPDAAWLDGIRIPQSGPSSPTFTLVSRNPFGFKEALSGAGSRTWTPAHSGTCSPAIPAGIDHTSDVPMTDGIAAEFAFGSCSIGLVKPWEGERIHEEFVSDDLELTLGNSRTR 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5279590 5282390 + evm.model.ptg000005l.783 HCH3g0734 541462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0734 326 MobiDBLite consensus disorder prediction 164 184 - -
HCH3g0734 326 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 326 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
HCH3g0734 326 MobiDBLite consensus disorder prediction 140 187 - -
HCH3g0734 326 MobiDBLite consensus disorder prediction 88 125 - -
HCH3g0734 326 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 140 IPR008540 -
HCH3g0734 326 MobiDBLite consensus disorder prediction 1 20 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0734 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0734 HCH-Chr3:5279590 HCH6g0624 HCH-Chr6:37496919 5.10E-129 dispersed
HCH3g0734 HCH-Chr3:5279590 HCH14g0542 HCH-Chr14:34338236 5.20E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0706 . 1 311 BZR Transcription Factor Family AT1G75080 59.2 8.3e-82 300.8
HCH14g0542 . 28 316 BZR Transcription Factor Family AT1G75080 58.2 1.1e-78 290.4
HCH4g0706 . 1 311 BZR Transcription Factor Family AT1G19350 57.9 3.5e-80 295.4
HCH14g0542 . 28 312 BZR Transcription Factor Family AT1G19350 58.3 8.8e-76 280.8
HCH14g0542 . 2 313 BZR Transcription Factor Family AT3G50750 60.6 8.6e-77 283.9
HCH4g0706 . 1 307 BZR Transcription Factor Family AT3G50750 51.3 4.3e-60 228.4
HCH3g0734 . 80 326 BZR Transcription Factor Family AT4G18890 53.2 5.5e-52 201.1
HCH6g0624 . 77 325 BZR Transcription Factor Family AT4G18890 53.4 5.7e-49 191.0
HCH6g0624 . 1 325 BZR Transcription Factor Family AT1G78700 72.8 6.5e-116 414.1
HCH3g0734 . 1 326 BZR Transcription Factor Family AT1G78700 70.0 4.5e-109 391.3
HCH14g0542 . 28 200 BZR Transcription Factor Family AT4G36780 76.8 1.2e-59 226.9
HCH4g0706 . 33 204 BZR Transcription Factor Family AT4G36780 57.1 5.2e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33336 PF05687 BES1_N 2.50E-67 No_clan HCH TF