Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0739 ATGGTGGCAAAGAACTTGTTTGTTTTCATAATTATTGCTCTGCGTTGCTCCAGTTTTCTGAGATTTGCAGATTCCAAGCTTCCACAAGATGAAGTTGATGCACTACAACAAATCACACGAACATTGGGTGCAGTTTTTTGGAAATTCAACAGTGAGTCCTGTACAATTGAAAAGTTTGGGATCACAGAAAAACCGCCAAAGGGATCTGAGGGTATTATTGATTGTGATTGCAACCTTGAGAACGACACATTTTGTCATGTCGTAAGGATTGAATTCAAAGGTTATGATCTGCCTGGCGTTCTTCCCCCTGAACTAGTCAAACTTCCTTTCCTGCAAAAGATTGATTTTGCTTTAAACTGCCTTACTGGCAAAATACCAAGGGAGTGGGCTTCAATGCAGTTAAAGTCAATCTCTTTGCTTGTAAATCGTTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACGACTCTAACATACCTGTCCCTTGAAGCAAATCAATTTACAGGTGCAGTCCCATCTGAACTTGGGAGGTTGAGCAATCTGCAAACCTTGATGCTATCATCTAATCAATTGACCGGCAAATTGCCAGTAACATTTTCTGGATTAAAGAACCTAACAGATTTTCGAATAAATGATAACAACCTCACTGGAACCATACCTGACTTCATACAGAATTGGAAACTACTCAAAAGATTAGAAATGCATGCAAGTGGACTTGAGGGACCCATTCCTGCAAATATATACCTTTTGAGTAATTTACAAGAGCTGAGGATCAGTGATATTAATGGGCCAAAGCAGGATTTCCCTGTGTTGATAAACACGAGGGGTATAATTAGATTAGTTTTGAGAAATTGTAACATTGCTGGAAAGATTCCTCCATACGTGTGGACGGTGCCAACTATGGAAATGCTGGACCTGAGTTTTAACCACTTGACTGGGGAACTTCCAGAGTTTATTAACATGGAGCGCATTAGATTCCTCTTTTTAAGTGGCAATTTGCTAAGTGGCAACCTACCAGACACAGTTTTGAAGGACGGAACTAATGTTGATCTTTCATACAATAACTTCACACGGCAAGGTCCTGAGCAACCTGCTTGTAGAAAGAATATGAATCTGAATCTGAACTTGTTTCGAAGTGCTTCCACAGAGAACACTTTACAGGAAGGTCTTCCATGCTCGAAGAATACCATCTGTCCAACATATTCAAAATGTTTGTTCATTAATTCTGGTGGAAATGACATTACCTTGGAGGAAAGTGGAGAAAACATTCATTACATGGGGGATGCAGATGTTGTAGGTGGGACTGCAAAATACTTCATTGATTACGAAAATTACTGGGGATTAAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATACACGTTATACTGTATCTCTGCCTTCATCAAATCTGCCTGAGTTATATTCAACAGCACGTCGTTCTCCAATTTCACTCACTTATTTCCATCATTGTTTGGATAATGGAAACTACACTGTAAAGCTTCACTTTGCAGAGATACAATTTACTAGTGATAAGACATATAGAAGTCTTGGGAGGCGGAAATTCAATATCTATATTCAGGAAAGGTTGGTGCGGGAGAATTTTGATATTGAAGAAAAGGCTGGGGTAGCTCAAAAGCCAACAGACATACAGTTCCCTAACATCAGTGTGACCAATCATGTCCTGGAGATTCGGTTCTATTGGGCTGGAAAAGGGACAACTAGGATTCCTGATAGAGGAGTTTACGGTCCCCTTATATCAGCAATTTCTGTTTTTTCTGATCTTAAAAAATGTTCAATTGCCGAGAGTGGTAAAAGTGCAACTGTAATTGTCGCCACTGGAGTCACAGTGGGACTAATATTATGCCTTGCAGTCGTCATACTAGGACTTCTGTGGTGGAAAGGCGGCCTTAAAGCAATAGGGCGAAGGAAAGGTGGTGCAGGTATTTCCGGAATAGAGCAGCAGACTGCAATTTATACCTTGAAACAAATAAAAGCTGCCACCAATGGCTTTGATTCTTCTAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTGTTCAAGGGTCAATTTACTGATGGTACAACTGTAGCAATCAAGCAGCTCTCGTCTAAATCAAGGCAAGGAAATCGTGAATTTCTGAATGAAATAGGAACGATCTCCTGTTTGCAACATCCAAATCTAGTCAAGCTTCATGGATGCTGTATTGAAGGGGATCAATTATTGTTAGTGTACGAATACTTGGAAAACAATAGTCTCGCCCGTGCTCTATTTGGTCCAGAATACGATCAGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATTGGGGTAGCAAAAGGATTAGCATATCTCCATGAGGAATCCAGCCTCAAAATTGTTCATAGAGACATCAAAGCTACTAATGTGCTACTGGATGGTAACTTAAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTGGACGACGAGGAGAAGTCTCACATCACCACCCGCGTGGCTGGGACCATAGGATATATGGCTCCAGAATATGCGCTTTGGGGTTATCTGACCCACAAAGTGGACGTTTACAGTTTTGGAGTTGTGGCCTTGGAAATTATCAGTGGAAGAAGCAACAATGATTATATACCAAGTGACACATGTGTTTGCCTTCTAGACTGGGCCTGTCATTTGCAACAATTTGGAGATCTGTTGGAGTTGGTTGATGAGAAGTTGAAGCCACAGATTGACAGGAAAGAAGCAGAAAATATGGTAAGAGTATCCCTTCTATGCACCAATGCATCACCATCTGTAAGGCCTACTATGTCAGAAGTGGTGAACATGCTCGAAGGGAAAACAGCGATTCCAGACATGGTCCCGGAACCGAGTTCTTATAGCCAAGATTTGAGGTTCAAGGCAATGAGAGATTTGCGTCAACATCAACATCAACAGAGCCAAAGCCTGAGTGGGAGCCATACCCAAAATTCCACAGCTCAAACATTTGGCTCTTCCTCTACATCAGGGAATGAATTCTATGAAATAAATCCAGAGCCAAGATCATCCTGA 3057 40.89 MVAKNLFVFIIIALRCSSFLRFADSKLPQDEVDALQQITRTLGAVFWKFNSESCTIEKFGITEKPPKGSEGIIDCDCNLENDTFCHVVRIEFKGYDLPGVLPPELVKLPFLQKIDFALNCLTGKIPREWASMQLKSISLLVNRLSGEIPAELGNITTLTYLSLEANQFTGAVPSELGRLSNLQTLMLSSNQLTGKLPVTFSGLKNLTDFRINDNNLTGTIPDFIQNWKLLKRLEMHASGLEGPIPANIYLLSNLQELRISDINGPKQDFPVLINTRGIIRLVLRNCNIAGKIPPYVWTVPTMEMLDLSFNHLTGELPEFINMERIRFLFLSGNLLSGNLPDTVLKDGTNVDLSYNNFTRQGPEQPACRKNMNLNLNLFRSASTENTLQEGLPCSKNTICPTYSKCLFINSGGNDITLEESGENIHYMGDADVVGGTAKYFIDYENYWGLSSTGDFMDDFDYQNTRYTVSLPSSNLPELYSTARRSPISLTYFHHCLDNGNYTVKLHFAEIQFTSDKTYRSLGRRKFNIYIQERLVRENFDIEEKAGVAQKPTDIQFPNISVTNHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVFSDLKKCSIAESGKSATVIVATGVTVGLILCLAVVILGLLWWKGGLKAIGRRKGGAGISGIEQQTAIYTLKQIKAATNGFDSSNKIGEGGFGPVFKGQFTDGTTVAIKQLSSKSRQGNREFLNEIGTISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPEYDQLNLDWPTRLRICIGVAKGLAYLHEESSLKIVHRDIKATNVLLDGNLNPKISDFGLAKLDDEEKSHITTRVAGTIGYMAPEYALWGYLTHKVDVYSFGVVALEIISGRSNNDYIPSDTCVCLLDWACHLQQFGDLLELVDEKLKPQIDRKEAENMVRVSLLCTNASPSVRPTMSEVVNMLEGKTAIPDMVPEPSSYSQDLRFKAMRDLRQHQHQQSQSLSGSHTQNSTAQTFGSSSTSGNEFYEINPEPRSS 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5310233 5322179 + evm.model.ptg000005l.778 HCH3g0739 541467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0739 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 972 IPR051824 -
HCH3g0739 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 386 - -
HCH3g0739 1018 MobiDBLite consensus disorder prediction 973 1018 - -
HCH3g0739 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
HCH3g0739 1018 Pfam Malectin domain 405 593 IPR021720 -
HCH3g0739 1018 Gene3D Ribonuclease Inhibitor 197 269 IPR032675 -
HCH3g0739 1018 Gene3D Ribonuclease Inhibitor 45 196 IPR032675 -
HCH3g0739 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0739 1018 Pfam Leucine Rich Repeat 303 320 IPR001611 GO:0005515(InterPro)
HCH3g0739 1018 SUPERFAMILY Protein kinase-like (PK-like) 658 972 IPR011009 -
HCH3g0739 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 598 - -
HCH3g0739 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 646 750 - -
HCH3g0739 1018 SUPERFAMILY L domain-like 82 340 - -
HCH3g0739 1018 Gene3D Ribonuclease Inhibitor 270 388 IPR032675 -
HCH3g0739 1018 Gene3D - 404 599 - -
HCH3g0739 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 751 958 - -
HCH3g0739 1018 ProSiteProfiles Protein kinase domain profile. 675 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0739 1018 Pfam Leucine rich repeat 157 216 IPR001611 GO:0005515(InterPro)
HCH3g0739 1018 SMART serkin_6 675 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0739 1018 Pfam Protein tyrosine and serine/threonine kinase 678 946 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0739 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
HCH3g0739 1018 CDD STKc_IRAK 681 948 - -
HCH3g0739 1018 Gene3D Transferase(Phosphotransferase) domain 1 751 955 - -
HCH3g0739 1018 MobiDBLite consensus disorder prediction 977 1018 - -
HCH3g0739 1018 Gene3D Phosphorylase Kinase; domain 1 643 750 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0739 HCH-Chr3:5310233 HCH6g0622 HCH-Chr6:37425742 1.50E-206 dispersed
HCH3g0739 HCH-Chr3:5310233 HCH12g0989 HCH-Chr12:7186492 3.80E-215 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81416 PF07714 PK_Tyr_Ser-Thr 7.90E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0739 - - - 0.0