Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0742 ATGGAAACGAATAATGGGGTGAGGTTTGTGTTGGGGAAGCAATCGTCGATGGCGCCGGAGAGAAACCGGGGGGAATTGGCCGAAGGGGAAGAGATTGATTCGCGAGTGAAATTGATGTATTTAGCTAATGAAGGAGATTTGGAAGGGATTAAGGAGCTTCTGGATTCTGGAATTGATGTTAATTTTCACGATATCGATAATCGTACTGCACTTCATATTGCTGCTTGTCAGGGTTTTTCTCAGATTGTTGATTTGTTGCTTCGACGTGGCGCTGACATTGATCCTCAAGATCTTTGGGGTAGCACGCCTCTTGCAGATGCTGTATTCTACAAAAACCATGATGTCATCAAATTATTGGAAAAACATGGCGCAAAACACCTGATGGCTCCCATGCACGTTAATCATGCTCGTGAAGTTCCAGAATATGAAATTGATCATAAGGAATTGGACTTCACAAACAGTGTTAATTTGACCAAAGGCACCTTTCATCTAGCATCATGGCGTGGAATCCAAGTCGCGGTAAAAGAGCTTCCTGAGGATGTGATTTCAGAGGAGGATAAAGTGACGGCTTTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCTAACGTTGTTCAATTTCTCGGTGCGGTGACTCAAAGTAGTCCAATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAATATTTGCGAAGAAAAGGACCATTAAAACCAATAGTAGCTGTGAAATTTGCCCTTGATATTGCCAGGGGAATGAATTATTTGCACGAGAACAAACCCGCGCCAATTATCCACCGTGATCTTGAGCCATCAAACATATTGAGAGATGACACCGGAAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAAATAAGGAGGATAGACCTCTAACTTGTCAAGACACTTCTTGCCGATATGTGGCTCCAGAAGTTTTCACAAAAGACGGATATGATACTAAAGTAGATGTTTTCTCGTTTGCTTTGATTCTACAAGAGATCATTGAAGGCCAACCGCCATTTTGTACCAAGAAAGAAAATATAATTTCGAAAGAATATGCAGCCGGGGTGCGCCCAGTTTTCAAAGCTCCAGCTAAATGCTATGCACATGGACTTAGATTGTTGATTGAAGATTGCTGGAACGAGAACCCGTCGAAGAGACCGACTTTTAGACAGATAATTACAAGGCTAGAAACCATTCATCACAGTCTTAGTCATAGAAGGCGTTGGAAGCTTCCAACATTAAGATGCTTTCAGAATGCCAAAATGAGGAGAAATCATTCACTTACCAGCAGTGGAAGCCTTTCATCCCGTTCAGCCAGCAGCATATGA 1353 42.28 METNNGVRFVLGKQSSMAPERNRGELAEGEEIDSRVKLMYLANEGDLEGIKELLDSGIDVNFHDIDNRTALHIAACQGFSQIVDLLLRRGADIDPQDLWGSTPLADAVFYKNHDVIKLLEKHGAKHLMAPMHVNHAREVPEYEIDHKELDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVTAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQYLRRKGPLKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTNKEDRPLTCQDTSCRYVAPEVFTKDGYDTKVDVFSFALILQEIIEGQPPFCTKKENIISKEYAAGVRPVFKAPAKCYAHGLRLLIEDCWNENPSKRPTFRQIITRLETIHHSLSHRRRWKLPTLRCFQNAKMRRNHSLTSSGSLSSRSASSI 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5357484 5362029 + evm.model.ptg000005l.775 HCH3g0742 541470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0742 450 Gene3D - 11 144 IPR036770 -
HCH3g0742 450 Pfam Ankyrin repeats (3 copies) 38 125 IPR002110 GO:0005515(InterPro)
HCH3g0742 450 ProSiteProfiles Ankyrin repeat region circular profile. 66 97 - -
HCH3g0742 450 FunFam Integrin-linked protein kinase family 18 142 - -
HCH3g0742 450 SUPERFAMILY Ankyrin repeat 37 126 IPR036770 -
HCH3g0742 450 Gene3D Phosphorylase Kinase; domain 1 145 226 - -
HCH3g0742 450 ProSiteProfiles Ankyrin repeat profile. 33 65 IPR002110 GO:0005515(InterPro)
HCH3g0742 450 Gene3D Transferase(Phosphotransferase) domain 1 227 445 - -
HCH3g0742 450 SUPERFAMILY Protein kinase-like (PK-like) 163 428 IPR011009 -
HCH3g0742 450 FunFam Integrin-linked protein kinase family 227 420 - -
HCH3g0742 450 Pfam Protein tyrosine and serine/threonine kinase 159 404 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0742 450 CDD STKc_MAP3K-like 160 404 - -
HCH3g0742 450 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515(InterPro)
HCH3g0742 450 FunFam serine/threonine-protein kinase STY46-like 144 227 - -
HCH3g0742 450 SMART ANK_2a 66 95 IPR002110 GO:0005515(InterPro)
HCH3g0742 450 SMART ANK_2a 33 62 IPR002110 GO:0005515(InterPro)
HCH3g0742 450 SMART ANK_2a 99 128 IPR002110 GO:0005515(InterPro)
HCH3g0742 450 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 69 405 IPR051681 GO:0004674(PANTHER)
HCH3g0742 450 PIRSF ILK 2 427 - -
HCH3g0742 450 ProSiteProfiles Protein kinase domain profile. 116 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0898 HCH-Chr1:57434513 HCH3g0742 HCH-Chr3:5357484 1.20E-64 dispersed
HCH3g0742 HCH-Chr3:5357484 HCH4g1774 HCH-Chr4:35794811 4.40E-78 dispersed
HCH14g1022 HCH-Chr14:37424285 HCH3g0742 HCH-Chr3:5357484 4.30E-142 wgd
HCH2g0899 HCH-Chr2:52483724 HCH3g0742 HCH-Chr3:5357484 3.50E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81417 PF07714 PK_Tyr_Ser-Thr 3.90E-55 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0742 - - - 0.0