Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0743 ATGGGTCTTGAAAGCGTGTACTTCTCAACTTGTGCAATGTGGTCCTCAAGGGAAAGAGATATAAAGGAACAAAAATTCCCAAGAATGAAGAAAAAACTCTCTCTCTCTCTCTCTCTCAATAATATTGGTGAAAATGGAGACTCATCTCATCAAATAAGAGAGATGGAGGGAGGGGAGGGGGTGATTAACTATAGGTTAGATTTCTTTATTGAAGTCCAAGTACACAAGATTTCAGGGATCATGGTTTGCCCAGATCAGAAGGAAGAAGGAGGTGAGAGAAGAATGGGAAGAGGAAAGATAGAAATAAAGAGGATAGAAAACACGACGAATCGCCAAGTTACGTTCTGCAAACGGCGAAGCGGGTTGCTTAAGAAGGCTTATGAACTTTCAGTTCTCTGTGATGCTGAGGTTGCCCTTATTGTCTTCTCCACCCGTGGCCGCCTCTATGAGTACAGCAACAACAATAGCGTTAAGGCAACAATTTCAAGGTACAAAAAGGCATGTTCAGATTCCTCCAATACTGGATCCATTTCTGAGGTCAATACTCAGTTCTACCAGCAAGAATCTGCCAAACTACGAGCCCAGATCGGCAATTTGCAGAACTTAAACAGGCATATAGTGGGAGACTCTCTAAGTTCATTGTCCATTAAAGATCTTAAAAGCCTCGAGCACAAACTTGAGAAAGGAATTAGCCGAATACGTTCAAGAAAGAATGAGCTACTTTTTGCTGAAATTGAGTATATGCAGAAAAGGGAAATTGACCTGCATAATAATAACCAGCTGCTACAAGCAAAGATAGTTGAGGGCGAGAGAAGCGAGCAAAATGAGAGTGTGATAGGAGGAAGAGGAGGAGGAAATCATTTGGAGGCGCAGCCACAGCAGCCAGCGTCGTCGCAATACGAGTACTCGAGAAATTATTTTGAAGTGAATGCATTGGAATTTCAAGGCAACCAGCATGATAATGATAATATGAATGATCACTACTCACGCCATGTTGATCACAATATGTCTCTTCAACTTGTGTAA 1026 41.81 MGLESVYFSTCAMWSSRERDIKEQKFPRMKKKLSLSLSLNNIGENGDSSHQIREMEGGEGVINYRLDFFIEVQVHKISGIMVCPDQKEEGGERRMGRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSNNNSVKATISRYKKACSDSSNTGSISEVNTQFYQQESAKLRAQIGNLQNLNRHIVGDSLSSLSIKDLKSLEHKLEKGISRIRSRKNELLFAEIEYMQKREIDLHNNNQLLQAKIVEGERSEQNESVIGGRGGGNHLEAQPQQPASSQYEYSRNYFEVNALEFQGNQHDNDNMNDHYSRHVDHNMSLQLV 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5370503 5376534 + evm.model.ptg000005l.774 HCH3g0743 541471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0743 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 95 294 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g0743 341 CDD MADS_MEF2_like 96 173 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH3g0743 341 ProSiteProfiles K-box domain profile. 182 272 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH3g0743 341 SMART madsneu2 95 154 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 FunFam agamous-like MADS-box protein AGL11 107 191 - -
HCH3g0743 341 Pfam K-box region 181 266 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH3g0743 341 ProSitePatterns MADS-box domain signature. 97 151 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 Gene3D - 107 175 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 SUPERFAMILY SRF-like 96 169 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 PRINTS MADS domain signature 97 117 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 PRINTS MADS domain signature 117 132 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 PRINTS MADS domain signature 132 153 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 ProSiteProfiles MADS-box domain profile. 95 155 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 104 151 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0743 341 MobiDBLite consensus disorder prediction 272 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0743 HCH-Chr3:5370503 HCH9g0327 HCH-Chr9:2041713 1.40E-36 dispersed
HCH13g1262 HCH-Chr13:40509985 HCH3g0743 HCH-Chr3:5370503 1.30E-21 transposed
HCH14g1023 HCH-Chr14:37434694 HCH3g0743 HCH-Chr3:5370503 4.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33337 PF01486 K-box 1.50E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0743 K09264 - mdm:103434929 324.709