Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0746 ATGAGATCCCCAAATGAAAAGTACAAAATTGAAAAAGGGAATAGAAATGAGATATTGTTGGCAAAAGTACTAGTCTATCGACAAATGCTGGCAAATAACCATAGCTGCAGTCCTCCCACTCCTAGAACTAGATTGGAAAGGCTTCTCAGGGAAAGAGAGCTCAGGAGATCAAACCGATCTTCCTCTCTTAATGAGGAGGCACGAGATGGTCTCAATCAGGGAGAATTTGATACTAATGATCCATTTGCAAATTATGGTGAAACTTGTGGGTCATTTAATGAGGAAGAGGTCATGGAAGGGATATCAATGGCAAAAGACTTCTGTGATGAATTGCAGAAGCCAGAAGGAAGGTCTTCTAAACAACGCCTACTGGTTGTAGCCAACAGGTTGCCTGTGTCTGCTGTTAGGAAAGGGAAGGAGACATGGCACCTTGAAATTAGTGTCGGCGGTCTAGTCAGCGCGCTTTTAGGATTAAAAGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGAGTGAATGTACCTGATGAAGCTGGACAGAGAGCCCTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCAGTGTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGTTATTGTAACAACATCTTGTGGCCTCTGTTCCACTATCTCGGTCTTCCACAAGAAGACCGCCTTGCAACAACGCGTAGTTTCCAATCTCAGTTTGATGCATACAAGAAGGCAAACAAAATGTTTGCTGATGTGGTAAACAAACATTATCAAGAGGGAGATGTTGTCTGGTGTCATGATTATCACTTGATGTTTCTCCCACAATGTCTTAAAGAGCACAATGATAAGATGAAAGTTGGTTGGTTCCTCCACACTCCATTTCCATCATCAGAAATACATAGAACTCTGCCATCTCGAACCGAGCTTTTGAGATCTGTTCTTGCTGCTGATTTAGTTGGTTTCCACACATATGATTATGCTAGGCATTTTGTCAGTGCATGCACCCGTATTCTTGGATTGGAAGGTACACCCGAAGGTGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCAATTGGAATAGATTCTGATCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGAATCACATTAAAGAACTGCAAGAAAGATTCGCTGGACGAAAGGTGATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCTCAAAAGATTTTGGCATTTGAACATTTTCTTGAAGAAAATCCAAATTGGCGTGACAAAGTAGTTTTGCTGCAAATTGCGGTGCCAACTAGGACTGACGTTCCTGAGTATCAAAAGCTTACAAGTCAGGTTCACGAGATTGTTGGTCGCATAAATGGGAGATTTGGTACTCTTACTGCTGTTCCAATACATCATCTGGATCGTTCTCTGGATTTTCATGCACTATGTGCTCTGTATGCTGTTACTGACGTGGCACTAGTCACATCTTTAAGGGATGGAATGAACCTTGTGAGTTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGGGTTCTTATTCTGAGTGAGTTTGCAGGTGCAGCCCAGTCACTAGGCGCTGGTGCTATTTTAGTTAATCCATGGAATGTGACCGAAGTCGCTTCTTCAATTGGTTATGCTTTGAATATGCAAGCTGATGAAAGAGAGAAACGACACAATCATAATTTCATGCATGTCACAACTCACACATCTCAAGAATGGGCTGCAACATTTGTAAGCGAACTCAATGATACCATTGTTGAAGCTCAAATCAGGACAAGACAAATACCACCTTCGCTTCCAGTCAGAGATGCAGTGCGTTGTTATTCACGTTCACAGAATCGGTTGTTTATACTGGGTTTCAATGCTTCCTTAACTAAACCAGTGGATGCCCTCGGGAGAAGATGTGGCCAAATAAGAGATATGGATCTTAAAGTACACCCAGATGTGAGAGAGCCCTTGAAGAAGCTATGCAATGACCCAAAGACAACAGTGGTTGTCCTCAGTGGAAGTGACAGGAGTGTCCTGGATGAAAATTTTGGTGACTACAACATGTGGTTGGCAGCAGAAAATGGGATGTTCTTACGTCCTACAAAGGGAGAGTGGATGACGACTATGCCTGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACCGAAAGAACTCCTCGATCTCATTTTGAGCTACGTGAAACTTCAATTCTGTGGAATTACAAGCATGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGGGATATGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGCAGATCCGTGGAGGTGCGAGCTGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATCTTGGGAGAAATAGTTCGCGATAAAGGCATAAACAAGCCTATTGACTATGTTCTTTGTGTTGGACACTTTCTAACCAAGGACGAAGATGTGTATACATTTTTCGAGCCTGAACTTCCATCCGAAATGCCACCTATAGCAAGAACATCAGTCTCTAATCCGGTTGGAGTATCTGTGCCAAAGTTTCCAACCAGTGAAATCCCACGAAGGTCAGCACGCCTAAAAAAACAGCGTTCCCTTTCCATGTTAGAAAGGAGAGCAAATAGCCATGGAAGTGCAGTCTTCTGGAGGCCTGTAATAACCGATCGATTATCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAAGGAGACAACTACTTCTCGTGCGCTGTAGGGCGGAAGCGATCAAATGCAAGATATCTCCTTGGATCATCAGATGATGTTGTGATGCTTTTGAAGGAGTTGTCCGAGTGTTCACTTGATAGGTTTCAAAAAATCAACTTAAATTAG 2898 42.79 MRSPNEKYKIEKGNRNEILLAKVLVYRQMLANNHSCSPPTPRTRLERLLRERELRRSNRSSSLNEEARDGLNQGEFDTNDPFANYGETCGSFNEEEVMEGISMAKDFCDELQKPEGRSSKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANKMFADVVNKHYQEGDVVWCHDYHLMFLPQCLKEHNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQNHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEHFLEENPNWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVASSIGYALNMQADEREKRHNHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPSLPVRDAVRCYSRSQNRLFILGFNASLTKPVDALGRRCGQIRDMDLKVHPDVREPLKKLCNDPKTTVVVLSGSDRSVLDENFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSILWNYKHADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPELPSEMPPIARTSVSNPVGVSVPKFPTSEIPRRSARLKKQRSLSMLERRANSHGSAVFWRPVITDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVMLLKELSECSLDRFQKINLN 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5405414 5416712 + evm.model.ptg000005l.771 HCH3g0746 541474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0746 965 FunFam Alpha,alpha-trehalose-phosphate synthase 646 715 - -
HCH3g0746 965 CDD GT20_TPS 122 587 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH3g0746 965 SUPERFAMILY HAD-like 646 951 IPR036412 -
HCH3g0746 965 CDD HAD_TPP 620 840 - -
HCH3g0746 965 Pfam Glycosyltransferase family 20 122 587 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH3g0746 965 Pfam Trehalose-phosphatase 645 852 IPR003337 GO:0005992(InterPro)
HCH3g0746 965 Gene3D Glycogen Phosphorylase B; 369 571 - -
HCH3g0746 965 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 712 792 - -
HCH3g0746 965 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 121 590 - -
HCH3g0746 965 Gene3D - 646 834 IPR023214 -
HCH3g0746 965 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 111 953 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH3g0746 965 Gene3D - 712 792 - -
HCH3g0746 965 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 369 571 - -
HCH3g0746 965 Gene3D Glycogen Phosphorylase B; 114 368 - -
HCH3g0746 965 MobiDBLite consensus disorder prediction 53 79 - -
HCH3g0746 965 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 122 587 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
HCH3g0746 965 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 114 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0746 HCH-Chr3:5405414 HCH6g1128 HCH-Chr6:45863708 3.30E-123 dispersed
HCH12g0986 HCH-Chr12:7151140 HCH3g0746 HCH-Chr3:5405414 0.00E+00 transposed
HCH3g0746 HCH-Chr3:5405414 HCH7g0126 HCH-Chr7:833987 1.20E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0746 K16055 - csv:101213690 1634.77