Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0749 ATGGTAGTAGAAGAAACGATCAATGAAGACCTCTCCATCTCAATCCCCAATTCCACCACAATTCCAAACCCTAGGCCACGAACCGGTGAAGATAACGACGAACTCGAAGAAGGAGAGATCGTAGTCGACGAAGATTTTGATTCTTCGAATTTATCCTCGGCGACGGTTCATCAGCCTCACCCTCTCGAACATTCTTGGACTTTCTGGTTTGATAATCCCTCTGCCAAAAATAAACAGGCCACGTGGGGCGCTTCTATGAACGAGATCTATACTTTCTCTTCCGTTGAGGAGTTCTGGAGTATCTACAACAATATTCATCATCCAAGCAAATTGGCATTGCGGGCAGATTTGTACTGTTTTAAGCATAAAATTGAGCCTAAATGGGAGGATCCTGTTTGTGCAAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGCACACGCTGCTTGCTTTGATCGGAGAACAATTTGATTCTGGTGATGAAATTTGTGGAGCTGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCTGATGAGGCTGCTCAGCTGAGCATTGGGAAACAGTGGAAGGAGTTCCTCGATTACAACGAGAGCATCGGATTTATATTCCATGATGATGCCAAAAAATTTGACAGGACCGCGAAGAACCGATATACAGTATGA 708 43.5 MVVEETINEDLSISIPNSTTIPNPRPRTGEDNDELEEGEIVVDEDFDSSNLSSATVHQPHPLEHSWTFWFDNPSAKNKQATWGASMNEIYTFSSVEEFWSIYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLHTLLALIGEQFDSGDEICGAVVNVRSGQDKISIWTKNASDEAAQLSIGKQWKEFLDYNESIGFIFHDDAKKFDRTAKNRYTV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5437155 5439040 - evm.model.ptg000005l.768 HCH3g0749 541477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0749 235 SUPERFAMILY eIF4e-like 52 231 IPR023398 -
HCH3g0749 235 MobiDBLite consensus disorder prediction 14 33 - -
HCH3g0749 235 FunFam Eukaryotic translation initiation factor 4E 51 235 - -
HCH3g0749 235 Gene3D RNA Cap, Translation Initiation Factor Eif4e 51 235 IPR023398 -
HCH3g0749 235 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
HCH3g0749 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 31 226 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
HCH3g0749 235 Pfam Eukaryotic initiation factor 4E 61 213 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0749 HCH-Chr3:5437155 HCH6g1472 HCH-Chr6:48359840 3.40E-58 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0749 K03259 - csv:101206312 419.853