Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g0755 | ATGAAGGCTGGTACAAGCAATACCACCGGCACCAAGAGTGTTAACGACAACCGATCTCCGGCACTTGTTCAGTACAATCTAGATGCTGAACTTATAAACAAATTTGATGAGTGTGATGCATCCGGTGAGTCTTTTAACTACGAAAGATCGGTTTTGAATGCGCCTCAAACCGTACCGGAAGAACATATAACTGCCTATTTGTCTAAGATACAGAGGGGTGGGCTTGTTCAACCTTTTGGTTGCATGTTTGCTATTGAAAAAGCTACATTCAGGATTATAAGTTACAGTGATAATTGTTTTGCGTTGTTGGGGCTGAGTGATCAGTTTGACCCGGCGGTGGTTAAGGGTTTGATAGGAGTTGATATAAGAGCTCTATTTACGCCTGCTTCGGGTGCTTCTTTGGTGAAAGCAGCTACGTCTAGGGAGATTTCGATGTTAAATCCAGTATGGGTGTATGTGAAAACTACCCAAAAGCCATTTTATGCCATATTGCATAGAATTGATGTGGGGATCGTGATTGATTTGGAGCCTGCAGTGTCGGTTGATCCTGCATTGTCGCTTGCAGGTGCTGTGCAATCACAGAAACTTGCTGTTCGAGCAATTTCTAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTATTTTATGTGATACAGTTGTGGAAGAAGTTCAAAAGCTTACTGGGTATGATAGAGTTATGGTCTATAAGTTCCATGACGATGAACACGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTCGGATTGCATTATCCATCTATTGATATACCTCAAGCTGCTCGTTTTCTGTTCAAGCAGAATCGCATCAGGATGATTTGCGATTGCCGTGCGAAACCTGTCAAGGTCATTCAATGTGATCAGCTTAAGCAACCTCTTTGTCTAGTGAGTTCAACTCTTCGAGCACCACATAGCTGCCATTTGCAATACATGGCAAATATGGGTACCATTGCCTCCTTAGCAATGGCAATAGTCATGAATACTGATAACTCACCAACAAATTTATGGGGCCTTGTAGTTTGCCACCATACTTCTTACCGATATGTCCCTTTCCCACTTCGTTATGCTTGTGAGTTTCTAATGCAAGCTTTTGGGCTGCAACTTTACATGGAGCTTCAATTGGCAGCACAACTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTTTGTGACATGCTCCTTCGAGACTCACCATATGGACTACTTACTCAATCTCCTAGTATAATGGATCTTGTGAAGTGTGATGGTGCTGCATTATACTATAAGGGTGCATGTTGGTTACTTGGTGTAACGCCAACTGAAGCACAAGTCAAGGATATTGCAGAGTGGGTACTCAATAATCATGAGGACTCTACTGGGCTAAGCACAGATAGTTTGGCTGAGGCTGGTTATTCTGAAGCTACTTCACTAGGTGATGCAGTGTGTGGTATGGCAGCTGTAAAAATCACTCCAAATGATTTCATATTTTGGTTCAGGTCCCATGCTACAAATGAAATCAAATGGGGAGGAGCCAAACATCAGCCAGATGCCAAGGATAATGGTGGAAGAATGCACCCGAGAACATCATTTAATGCATTTCTCGAAGTTGTTAAAAGTAAAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATCCATTCATTACAGCTTATAATGAGAGAATCTTTTTTGAATACTAGGGTCAATGATTCAAAGGTAACACATTCTACCCAGCAGAGTGATACTGATATCGAAGATGCTGAAGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCCAATGTTCCAATTTTTGGGGTCGATTTGACTGGTGTAATCAATGGATGGAATGCTACAATGTCTAAACTAACAGGATTACAAACTACTGAAGCTTTGGGGAAATCTTTGGTTAATGATATTGCTCATGAAGATTCACACAGAATTATTGAAGATCTACTTTTTCATGCTCAACAAGGTGAGGAAGACAAAAATGTGGAGCTAAAACTGAGAAATTATGGGACTGATAAGGAAAGCACTGACTTGTATATTATGGTCAATGCTTGCACAAGCAGGGACTACACAAACAAAACTGTTGGGGTTTGCTTTGTAGGTCAAGATGTTACATCTGAGAAAGTTGCAATGGATAAATTTATTCGTTTGCAAGGAGATTATAAGACTATTATTCAAAGTCTCAATCCTTTGATTCCACCGATATTTGTTTCTGATGAGAATGGCTATTGCTCTGAATGGACTGCAGCCATGGAAAAGCTTACTGGTTGGAGGAGAGATGAAGTTATTGGAAAAACACTAGCGGGGGAGATCTTTGGGAATTTATGTAAGTTGAAAAGTCCAGATACTCTCACTAGGTTTCTCATCCTATTGTATCAAGGCATTAGTGGTGAAGAAACTGAGAAGTTTCAATTCGAATTTTTTGACAAGAAAGGGAACTTTGTGGAGGTACTCTTAACATCAAACAAGAGAACTGATGCAAAGAGAAACATCATTGGTTGTATATGTTTCTTACAGATTATTGAGCCCAACTTGCAACGGGTCTCTGAAGGACAGGGGGACAGAGAAAGGTTGTTGCAACTTACGGAGTTGGCCTACATAAAGCAGGAGATGAAAAATCCTTTAAGTGGTATTAGATTTACTCATGAACTCCTTGGAAATTCTGGCATTACAGAAAACCAGAAACTCTTTCTTGACACGAGTAATGCATGCGAGAGACAGATCATGGCTCTCCTTAAGGAAATGGATTTTAGAAGTCTAGAGGAAGGCAATGTCGAGCTAAAAACAGAAGAATTTCTTTTGGGGAATGTTTTGGATGCCATTGTATGTCAAAATATGAACTACATTAGAGAGAAGAATTTACAACTTTTTCATGAAATTCCAGAAGAAGTCAAATCCTTAACTCTTTGTGGTGATCAAATCAAGCTTCAGCTAGTTTTGTCAGATTTTTTACTTAACATAGTGCAATATGCACCCGCTCCGGATGGTTGGGTTGAAATTGAAATTTTACCTGGTTTAAAGCTTATACAGGATGGAAATGAACTAAATCACTTGCAGATCAGAATGTCCCATCCAGGTCAAGGTCTACCTCATGATCTTATCCAAGATATGGTTGGAAGAGAACAACAACAGGGGACCTCACAGCAAGGCCTTGGTCTAAACCTGTCACGTAAGCTTCTTAACAAATTGAATGGTACCATCCAATATATTAGAGAGCAAAGTAAATGCTACTTCCTCATTGATCTTGAACTCAAGACGAAGCACTCAATGGGATCACTGGAAGCTAGTTCAAGTCGAAGGACCTGA | 3339 | 40.34 | MKAGTSNTTGTKSVNDNRSPALVQYNLDAELINKFDECDASGESFNYERSVLNAPQTVPEEHITAYLSKIQRGGLVQPFGCMFAIEKATFRIISYSDNCFALLGLSDQFDPAVVKGLIGVDIRALFTPASGASLVKAATSREISMLNPVWVYVKTTQKPFYAILHRIDVGIVIDLEPAVSVDPALSLAGAVQSQKLAVRAISRLQALPGGDIGILCDTVVEEVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPSIDIPQAARFLFKQNRIRMICDCRAKPVKVIQCDQLKQPLCLVSSTLRAPHSCHLQYMANMGTIASLAMAIVMNTDNSPTNLWGLVVCHHTSYRYVPFPLRYACEFLMQAFGLQLYMELQLAAQLTEKKVLKTQTLLCDMLLRDSPYGLLTQSPSIMDLVKCDGAALYYKGACWLLGVTPTEAQVKDIAEWVLNNHEDSTGLSTDSLAEAGYSEATSLGDAVCGMAAVKITPNDFIFWFRSHATNEIKWGGAKHQPDAKDNGGRMHPRTSFNAFLEVVKSKSLPWEVSEINAIHSLQLIMRESFLNTRVNDSKVTHSTQQSDTDIEDAEELSSVACEMVRLIETANVPIFGVDLTGVINGWNATMSKLTGLQTTEALGKSLVNDIAHEDSHRIIEDLLFHAQQGEEDKNVELKLRNYGTDKESTDLYIMVNACTSRDYTNKTVGVCFVGQDVTSEKVAMDKFIRLQGDYKTIIQSLNPLIPPIFVSDENGYCSEWTAAMEKLTGWRRDEVIGKTLAGEIFGNLCKLKSPDTLTRFLILLYQGISGEETEKFQFEFFDKKGNFVEVLLTSNKRTDAKRNIIGCICFLQIIEPNLQRVSEGQGDRERLLQLTELAYIKQEMKNPLSGIRFTHELLGNSGITENQKLFLDTSNACERQIMALLKEMDFRSLEEGNVELKTEEFLLGNVLDAIVCQNMNYIREKNLQLFHEIPEEVKSLTLCGDQIKLQLVLSDFLLNIVQYAPAPDGWVEIEILPGLKLIQDGNELNHLQIRMSHPGQGLPHDLIQDMVGREQQQGTSQQGLGLNLSRKLLNKLNGTIQYIREQSKCYFLIDLELKTKHSMGSLEASSSRRT | 1112 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5496339 | 5501156 | - | evm.model.ptg000005l.762 | HCH3g0755 | 541483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g0755 | 1112 | Gene3D | PAS domain | 744 | 856 | - | - | |
| HCH3g0755 | 1112 | Gene3D | - | 192 | 543 | IPR029016 | - | |
| HCH3g0755 | 1112 | SUPERFAMILY | GAF domain-like | 191 | 378 | - | - | |
| HCH3g0755 | 1112 | Gene3D | PAS domain | 69 | 314 | - | - | |
| HCH3g0755 | 1112 | SMART | gaf_1 | 211 | 392 | IPR003018 | GO:0005515(InterPro) | |
| HCH3g0755 | 1112 | ProSiteProfiles | Histidine kinase domain profile. | 877 | 1097 | IPR005467 | - | |
| HCH3g0755 | 1112 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 603 | 711 | IPR035965 | - | |
| HCH3g0755 | 1112 | SMART | HisKA_10 | 870 | 934 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH3g0755 | 1112 | Pfam | His Kinase A (phospho-acceptor) domain | 873 | 934 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH3g0755 | 1112 | Pfam | PAS fold | 731 | 851 | IPR013767 | GO:0006355(InterPro) | |
| HCH3g0755 | 1112 | Pfam | PAS fold | 600 | 715 | IPR013767 | GO:0006355(InterPro) | |
| HCH3g0755 | 1112 | SMART | HKATPase_4 | 982 | 1095 | IPR003594 | - | |
| HCH3g0755 | 1112 | ProSiteProfiles | PAC domain profile. | 671 | 727 | IPR000700 | - | |
| HCH3g0755 | 1112 | SMART | pas_2 | 733 | 804 | IPR000014 | - | |
| HCH3g0755 | 1112 | SMART | pas_2 | 599 | 666 | IPR000014 | - | |
| HCH3g0755 | 1112 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 70 | 179 | IPR035965 | - | |
| HCH3g0755 | 1112 | Pfam | PAS fold | 65 | 178 | IPR013654 | GO:0006355(InterPro) | |
| HCH3g0755 | 1112 | ProSiteProfiles | PAS repeat profile. | 731 | 809 | IPR000014 | - | |
| HCH3g0755 | 1112 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 714 | 849 | IPR035965 | - | |
| HCH3g0755 | 1112 | CDD | HisKA | 875 | 930 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH3g0755 | 1112 | Gene3D | PAS domain | 598 | 719 | - | - | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 619 | 634 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 693 | 710 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 126 | 148 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 530 | 548 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 311 | 332 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 600 | 616 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 412 | 432 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 497 | 516 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 226 | 245 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | PRINTS | Phytochrome signature | 713 | 733 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | FunFam | Phytochrome | 387 | 518 | - | - | |
| HCH3g0755 | 1112 | CDD | PAS | 608 | 712 | IPR000014 | - | |
| HCH3g0755 | 1112 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 982 | 1093 | IPR003594 | - | |
| HCH3g0755 | 1112 | FunFam | Phytochrome | 744 | 852 | - | - | |
| HCH3g0755 | 1112 | PIRSF | Phytochrome_conventional | 1 | 1105 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| HCH3g0755 | 1112 | CDD | PAS | 742 | 850 | IPR000014 | - | |
| HCH3g0755 | 1112 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 211 | 372 | IPR016132 | - | |
| HCH3g0755 | 1112 | Pfam | GAF domain | 215 | 379 | IPR003018 | GO:0005515(InterPro) | |
| HCH3g0755 | 1112 | Pfam | Phytochrome region | 395 | 570 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH3g0755 | 1112 | NCBIfam | PAS domain S-box protein | 745 | 849 | IPR000014 | - | |
| HCH3g0755 | 1112 | NCBIfam | PAS domain S-box protein | 604 | 721 | IPR000014 | - | |
| HCH3g0755 | 1112 | Gene3D | - | 912 | 1089 | IPR036890 | - | |
| HCH3g0755 | 1112 | SUPERFAMILY | GAF domain-like | 390 | 569 | - | - | |
| HCH3g0755 | 1112 | FunFam | Phytochrome | 593 | 725 | - | - | |
| HCH3g0755 | 1112 | CDD | HATPase_Phy-like | 982 | 1095 | IPR044767 | - | |
| HCH3g0755 | 1112 | PANTHER | OS08G0260000 PROTEIN | 14 | 974 | - | - | |
| HCH3g0755 | 1112 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 311 | 320 | IPR013516 | - | |
| HCH3g0755 | 1112 | ProSiteProfiles | PAS repeat profile. | 597 | 668 | IPR000014 | - | |
| HCH3g0755 | 1112 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 946 | 1093 | IPR036890 | - | |
| HCH3g0755 | 1112 | Gene3D | - | 387 | 560 | IPR043150 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g0755 | HCH-Chr3:5496339 | HCH7g1026 | HCH-Chr7:41814062 | 0.00E+00 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g0755 | K12123 | - | csv:101214900 | 1729.92 |