Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0755 ATGAAGGCTGGTACAAGCAATACCACCGGCACCAAGAGTGTTAACGACAACCGATCTCCGGCACTTGTTCAGTACAATCTAGATGCTGAACTTATAAACAAATTTGATGAGTGTGATGCATCCGGTGAGTCTTTTAACTACGAAAGATCGGTTTTGAATGCGCCTCAAACCGTACCGGAAGAACATATAACTGCCTATTTGTCTAAGATACAGAGGGGTGGGCTTGTTCAACCTTTTGGTTGCATGTTTGCTATTGAAAAAGCTACATTCAGGATTATAAGTTACAGTGATAATTGTTTTGCGTTGTTGGGGCTGAGTGATCAGTTTGACCCGGCGGTGGTTAAGGGTTTGATAGGAGTTGATATAAGAGCTCTATTTACGCCTGCTTCGGGTGCTTCTTTGGTGAAAGCAGCTACGTCTAGGGAGATTTCGATGTTAAATCCAGTATGGGTGTATGTGAAAACTACCCAAAAGCCATTTTATGCCATATTGCATAGAATTGATGTGGGGATCGTGATTGATTTGGAGCCTGCAGTGTCGGTTGATCCTGCATTGTCGCTTGCAGGTGCTGTGCAATCACAGAAACTTGCTGTTCGAGCAATTTCTAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTATTTTATGTGATACAGTTGTGGAAGAAGTTCAAAAGCTTACTGGGTATGATAGAGTTATGGTCTATAAGTTCCATGACGATGAACACGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTCGGATTGCATTATCCATCTATTGATATACCTCAAGCTGCTCGTTTTCTGTTCAAGCAGAATCGCATCAGGATGATTTGCGATTGCCGTGCGAAACCTGTCAAGGTCATTCAATGTGATCAGCTTAAGCAACCTCTTTGTCTAGTGAGTTCAACTCTTCGAGCACCACATAGCTGCCATTTGCAATACATGGCAAATATGGGTACCATTGCCTCCTTAGCAATGGCAATAGTCATGAATACTGATAACTCACCAACAAATTTATGGGGCCTTGTAGTTTGCCACCATACTTCTTACCGATATGTCCCTTTCCCACTTCGTTATGCTTGTGAGTTTCTAATGCAAGCTTTTGGGCTGCAACTTTACATGGAGCTTCAATTGGCAGCACAACTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTTTGTGACATGCTCCTTCGAGACTCACCATATGGACTACTTACTCAATCTCCTAGTATAATGGATCTTGTGAAGTGTGATGGTGCTGCATTATACTATAAGGGTGCATGTTGGTTACTTGGTGTAACGCCAACTGAAGCACAAGTCAAGGATATTGCAGAGTGGGTACTCAATAATCATGAGGACTCTACTGGGCTAAGCACAGATAGTTTGGCTGAGGCTGGTTATTCTGAAGCTACTTCACTAGGTGATGCAGTGTGTGGTATGGCAGCTGTAAAAATCACTCCAAATGATTTCATATTTTGGTTCAGGTCCCATGCTACAAATGAAATCAAATGGGGAGGAGCCAAACATCAGCCAGATGCCAAGGATAATGGTGGAAGAATGCACCCGAGAACATCATTTAATGCATTTCTCGAAGTTGTTAAAAGTAAAAGTTTGCCTTGGGAAGTTTCAGAAATTAATGCCATCCATTCATTACAGCTTATAATGAGAGAATCTTTTTTGAATACTAGGGTCAATGATTCAAAGGTAACACATTCTACCCAGCAGAGTGATACTGATATCGAAGATGCTGAAGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCCAATGTTCCAATTTTTGGGGTCGATTTGACTGGTGTAATCAATGGATGGAATGCTACAATGTCTAAACTAACAGGATTACAAACTACTGAAGCTTTGGGGAAATCTTTGGTTAATGATATTGCTCATGAAGATTCACACAGAATTATTGAAGATCTACTTTTTCATGCTCAACAAGGTGAGGAAGACAAAAATGTGGAGCTAAAACTGAGAAATTATGGGACTGATAAGGAAAGCACTGACTTGTATATTATGGTCAATGCTTGCACAAGCAGGGACTACACAAACAAAACTGTTGGGGTTTGCTTTGTAGGTCAAGATGTTACATCTGAGAAAGTTGCAATGGATAAATTTATTCGTTTGCAAGGAGATTATAAGACTATTATTCAAAGTCTCAATCCTTTGATTCCACCGATATTTGTTTCTGATGAGAATGGCTATTGCTCTGAATGGACTGCAGCCATGGAAAAGCTTACTGGTTGGAGGAGAGATGAAGTTATTGGAAAAACACTAGCGGGGGAGATCTTTGGGAATTTATGTAAGTTGAAAAGTCCAGATACTCTCACTAGGTTTCTCATCCTATTGTATCAAGGCATTAGTGGTGAAGAAACTGAGAAGTTTCAATTCGAATTTTTTGACAAGAAAGGGAACTTTGTGGAGGTACTCTTAACATCAAACAAGAGAACTGATGCAAAGAGAAACATCATTGGTTGTATATGTTTCTTACAGATTATTGAGCCCAACTTGCAACGGGTCTCTGAAGGACAGGGGGACAGAGAAAGGTTGTTGCAACTTACGGAGTTGGCCTACATAAAGCAGGAGATGAAAAATCCTTTAAGTGGTATTAGATTTACTCATGAACTCCTTGGAAATTCTGGCATTACAGAAAACCAGAAACTCTTTCTTGACACGAGTAATGCATGCGAGAGACAGATCATGGCTCTCCTTAAGGAAATGGATTTTAGAAGTCTAGAGGAAGGCAATGTCGAGCTAAAAACAGAAGAATTTCTTTTGGGGAATGTTTTGGATGCCATTGTATGTCAAAATATGAACTACATTAGAGAGAAGAATTTACAACTTTTTCATGAAATTCCAGAAGAAGTCAAATCCTTAACTCTTTGTGGTGATCAAATCAAGCTTCAGCTAGTTTTGTCAGATTTTTTACTTAACATAGTGCAATATGCACCCGCTCCGGATGGTTGGGTTGAAATTGAAATTTTACCTGGTTTAAAGCTTATACAGGATGGAAATGAACTAAATCACTTGCAGATCAGAATGTCCCATCCAGGTCAAGGTCTACCTCATGATCTTATCCAAGATATGGTTGGAAGAGAACAACAACAGGGGACCTCACAGCAAGGCCTTGGTCTAAACCTGTCACGTAAGCTTCTTAACAAATTGAATGGTACCATCCAATATATTAGAGAGCAAAGTAAATGCTACTTCCTCATTGATCTTGAACTCAAGACGAAGCACTCAATGGGATCACTGGAAGCTAGTTCAAGTCGAAGGACCTGA 3339 40.34 MKAGTSNTTGTKSVNDNRSPALVQYNLDAELINKFDECDASGESFNYERSVLNAPQTVPEEHITAYLSKIQRGGLVQPFGCMFAIEKATFRIISYSDNCFALLGLSDQFDPAVVKGLIGVDIRALFTPASGASLVKAATSREISMLNPVWVYVKTTQKPFYAILHRIDVGIVIDLEPAVSVDPALSLAGAVQSQKLAVRAISRLQALPGGDIGILCDTVVEEVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPSIDIPQAARFLFKQNRIRMICDCRAKPVKVIQCDQLKQPLCLVSSTLRAPHSCHLQYMANMGTIASLAMAIVMNTDNSPTNLWGLVVCHHTSYRYVPFPLRYACEFLMQAFGLQLYMELQLAAQLTEKKVLKTQTLLCDMLLRDSPYGLLTQSPSIMDLVKCDGAALYYKGACWLLGVTPTEAQVKDIAEWVLNNHEDSTGLSTDSLAEAGYSEATSLGDAVCGMAAVKITPNDFIFWFRSHATNEIKWGGAKHQPDAKDNGGRMHPRTSFNAFLEVVKSKSLPWEVSEINAIHSLQLIMRESFLNTRVNDSKVTHSTQQSDTDIEDAEELSSVACEMVRLIETANVPIFGVDLTGVINGWNATMSKLTGLQTTEALGKSLVNDIAHEDSHRIIEDLLFHAQQGEEDKNVELKLRNYGTDKESTDLYIMVNACTSRDYTNKTVGVCFVGQDVTSEKVAMDKFIRLQGDYKTIIQSLNPLIPPIFVSDENGYCSEWTAAMEKLTGWRRDEVIGKTLAGEIFGNLCKLKSPDTLTRFLILLYQGISGEETEKFQFEFFDKKGNFVEVLLTSNKRTDAKRNIIGCICFLQIIEPNLQRVSEGQGDRERLLQLTELAYIKQEMKNPLSGIRFTHELLGNSGITENQKLFLDTSNACERQIMALLKEMDFRSLEEGNVELKTEEFLLGNVLDAIVCQNMNYIREKNLQLFHEIPEEVKSLTLCGDQIKLQLVLSDFLLNIVQYAPAPDGWVEIEILPGLKLIQDGNELNHLQIRMSHPGQGLPHDLIQDMVGREQQQGTSQQGLGLNLSRKLLNKLNGTIQYIREQSKCYFLIDLELKTKHSMGSLEASSSRRT 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5496339 5501156 - evm.model.ptg000005l.762 HCH3g0755 541483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0755 1112 Gene3D PAS domain 744 856 - -
HCH3g0755 1112 Gene3D - 192 543 IPR029016 -
HCH3g0755 1112 SUPERFAMILY GAF domain-like 191 378 - -
HCH3g0755 1112 Gene3D PAS domain 69 314 - -
HCH3g0755 1112 SMART gaf_1 211 392 IPR003018 GO:0005515(InterPro)
HCH3g0755 1112 ProSiteProfiles Histidine kinase domain profile. 877 1097 IPR005467 -
HCH3g0755 1112 SUPERFAMILY PYP-like sensor domain (PAS domain) 603 711 IPR035965 -
HCH3g0755 1112 SMART HisKA_10 870 934 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH3g0755 1112 Pfam His Kinase A (phospho-acceptor) domain 873 934 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH3g0755 1112 Pfam PAS fold 731 851 IPR013767 GO:0006355(InterPro)
HCH3g0755 1112 Pfam PAS fold 600 715 IPR013767 GO:0006355(InterPro)
HCH3g0755 1112 SMART HKATPase_4 982 1095 IPR003594 -
HCH3g0755 1112 ProSiteProfiles PAC domain profile. 671 727 IPR000700 -
HCH3g0755 1112 SMART pas_2 733 804 IPR000014 -
HCH3g0755 1112 SMART pas_2 599 666 IPR000014 -
HCH3g0755 1112 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 179 IPR035965 -
HCH3g0755 1112 Pfam PAS fold 65 178 IPR013654 GO:0006355(InterPro)
HCH3g0755 1112 ProSiteProfiles PAS repeat profile. 731 809 IPR000014 -
HCH3g0755 1112 SUPERFAMILY PYP-like sensor domain (PAS domain) 714 849 IPR035965 -
HCH3g0755 1112 CDD HisKA 875 930 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH3g0755 1112 Gene3D PAS domain 598 719 - -
HCH3g0755 1112 PRINTS Phytochrome signature 619 634 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 693 710 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 126 148 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 530 548 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 311 332 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 600 616 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 412 432 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 497 516 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 226 245 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 PRINTS Phytochrome signature 713 733 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 FunFam Phytochrome 387 518 - -
HCH3g0755 1112 CDD PAS 608 712 IPR000014 -
HCH3g0755 1112 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 982 1093 IPR003594 -
HCH3g0755 1112 FunFam Phytochrome 744 852 - -
HCH3g0755 1112 PIRSF Phytochrome_conventional 1 1105 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
HCH3g0755 1112 CDD PAS 742 850 IPR000014 -
HCH3g0755 1112 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 211 372 IPR016132 -
HCH3g0755 1112 Pfam GAF domain 215 379 IPR003018 GO:0005515(InterPro)
HCH3g0755 1112 Pfam Phytochrome region 395 570 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH3g0755 1112 NCBIfam PAS domain S-box protein 745 849 IPR000014 -
HCH3g0755 1112 NCBIfam PAS domain S-box protein 604 721 IPR000014 -
HCH3g0755 1112 Gene3D - 912 1089 IPR036890 -
HCH3g0755 1112 SUPERFAMILY GAF domain-like 390 569 - -
HCH3g0755 1112 FunFam Phytochrome 593 725 - -
HCH3g0755 1112 CDD HATPase_Phy-like 982 1095 IPR044767 -
HCH3g0755 1112 PANTHER OS08G0260000 PROTEIN 14 974 - -
HCH3g0755 1112 ProSitePatterns Phytochrome chromophore attachment site signature. 311 320 IPR013516 -
HCH3g0755 1112 ProSiteProfiles PAS repeat profile. 597 668 IPR000014 -
HCH3g0755 1112 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 946 1093 IPR036890 -
HCH3g0755 1112 Gene3D - 387 560 IPR043150 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0755 K12123 - - csv:101214900 1729.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0755 HCH-Chr3:5496339 HCH7g1026 HCH-Chr7:41814062 0.00E+00 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g1345 . 3 1232 Histidine Kinase Gene Family AT2G17820 63.6 0.0e+00 1460.3
HCH1g0075 . 18 991 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1352.4
HCH10g1380 . 20 985 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1323.9
HCH7g0328 . 278 1230 Histidine Kinase Gene Family AT2G01830 53.6 9.0e-276 946.8
HCH10g0077 . 58 1008 Histidine Kinase Gene Family AT2G01830 53.2 1.3e-274 943.0
HCH2g0666 . 287 1240 Histidine Kinase Gene Family AT2G01830 52.7 4.1e-268 921.4
HCH12g0444 . 1 987 Histidine Kinase Gene Family AT5G10720 58.5 1.4e-296 1015.8
HCH8g0009 . 1 1122 Histidine Kinase Gene Family AT1G09570 78.6 0.0e+00 1788.9
HCH7g0347 . 13 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.9
HCH7g1026 . 41 1127 Histidine Kinase Gene Family AT1G09570 54.2 0.0e+00 1189.1
HCH7g1026 . 37 1068 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1662.5
HCH3g0755 . 10 1023 Histidine Kinase Gene Family AT2G18790 58.8 0.0e+00 1216.8
HCH7g0347 . 27 1068 Histidine Kinase Gene Family AT2G18790 52.6 1.1e-311 1066.2
HCH8g0009 . 21 1056 Histidine Kinase Gene Family AT2G18790 51.5 1.6e-310 1062.4
HCH7g0347 . 20 1115 Histidine Kinase Gene Family AT5G35840 63.1 0.0e+00 1389.0
HCH7g1026 . 41 1129 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1149.0
HCH8g0009 . 9 1116 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1107.8
HCH7g1026 . 37 1129 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1700.3
HCH3g0755 . 10 1095 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1252.7
HCH8g0009 . 8 1117 Histidine Kinase Gene Family AT4G16250 51.5 0.0e+00 1120.5
HCH7g0347 . 19 1114 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1114.0
HCH3g0755 . 24 1109 Histidine Kinase Gene Family AT4G18130 61.6 0.0e+00 1335.1
HCH7g1026 . 45 1127 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34