Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0767 | ATGACTTGTTCTTGTGCAAAACACTTCTTCCAGAGATTCTTCACAAATGAATTCCAAATGGATAGTTCTCTTTATCACAACAACACCTTCTTGTCTTCTGATCATCTCTTGCCGTCTCTCGGCGCAAGGATCAACCAAACTACTAAACTTCGAAAACACATCGTTTCGCCTTTCAATCCACTTTATAGAGCCTGGGAGCTTTGGCTGGTTCTTCTGGTCATTTACTCAGCTTGGATCTGTCCTTTCGAGTTTGCATTTCTCCCCTACAAGCAAAATGCGCTGTTTATCGTCGACAACTTTGTCAACGGCTTCTTCGCCATTGATATCGTTCTGACATTCTTCGTGGCTTATCTCGACAGCCAGTCGTATCTTCTCATCGACAACCCCAGACAAATTGCTATCAGGTATTTATCAACCTGGTTTATCTTTGACGTCTGCTCCACTGCACCATTACAATCCATCAGCTTCTTGTTCACAAATCATAGCAGTGGAGTTGGGTTTAAGCTTCTTAACATGCTCAGGCTATGGCGTCTCAGACGGGTCAGCTCCCTCTTTGCAAGGCTGGAGAAAGACATCAGATTCAACTATTTCTGGACAAGATGCACAAAGTTGATTTCTGTTACACTATTTGCAGTTCACTGTGCTGGATGCTTTAACTACGTCATTGCCGATAAGTATCCGGACCCGAAAAGGACATGGATCGGAGCCGTAAACCCGGATTTCAAAGAAGATAGCGTTTGGAACAAATATGTTACTGCGCTTTACTGGTCCATTACGACCTTAACGACCACTGGCTATGGAGATTTGCACGCTGAGAACCCGAGAGAGATGGTGTTTGATATCTTTTTTATGCTCTTCAACTTGGGTTTGACGTCTTATCTCATTGGAAACATGACAAACCTCGTTGTCCATTGGACTAGTCGAACCAGAAATTTTAGGGACACAGTGAGAGCAGCAACAGAATTTGCAGCAAGAAACCAGCTGCCTCATAGGATACAGGATCAAATGTTGTCACATATTTGTCTCAAATTCAAAACTGAAGGATTGAAGCAACAAGATACCTTAAATGATCTTCCAAAAGCCATTAGAGCATCAATATCTCATTATCTCTTCTATCCCATTCTTCAGAAAGTGTACCTCTTCCATGGAGTTTCTCATAACTTTCTTTTCCAAATGGTCTCAGATGTGGAGGCTGAGTATTTCCCACCCAAGGAAGATGTTATTCTGCAGAATGAGGCTCAGACAGATCTTTATATTTTGGTCTCAGGCGGTGTGGATCTGATATCCAGCATCAACGGCCAAGATAAAGTGATTGGACAAGCAAAGGCAGGAGAGATGTTTGGAGAATTTGGAGTTTTATGTCAAAGGCCACAACCTTTCACAGCTAGGACCACCAACCTCTCTCAAATCTTAAGGCTCAAGAGACCTTCCTTCTTGTACACTATTGAATCAAATTCACAAGATGGGAATATTATAATGAACAATTTTTTCATGAAGACGAGGGAAGAAGAAAGAATGGGATTTGAGGTCATGGAAGAAAGAGCAAGTCATAAGATTCTCGTGGAAGAAGAAGAAGAAGAAGACGATATTGGAAATCAAGCATATTATGCCAAAGGAGAAACAACAACAAAACCTTGGGCAATAGAGAAGCAAGGGAATTACAAAAGAAGGTGTAGTTTTCTGTCAGAAAGAAGTGATGAAAATATGGAGGGATCAGAAGAAGTTAGGATGGAGTTTGAAGACACATTCTCTCAAAACAGATATGGAAGAAATGGGGAATTTGTTAGCTGCTTAGAGAATAATGTGGGAACAAGCTCATGCTCAAATGCTGGTCATGGGAATTATTGTTGTAGGAAAAGAGTGGTGGTGCATTTGCAATCTCAATGTGGAGGCAAAGTTATAAGTCAATATGGGAAGTTGATGCTTCTCCCTGATTCCATTGAAGAGCTCTGCAAAATGGCTGGTGAAAAGTTGGGAGGGCATATGCCAACAAAAGTGATGAACGCAGAGAATGCAGAAATTGATGATATAAATGTTATTCGTGATGGTGACCATTTGTTTCTCCTTCATAATGATATCCAAAATGTGGTAGCCAAGCATTGA | 2103 | 41.23 | MTCSCAKHFFQRFFTNEFQMDSSLYHNNTFLSSDHLLPSLGARINQTTKLRKHIVSPFNPLYRAWELWLVLLVIYSAWICPFEFAFLPYKQNALFIVDNFVNGFFAIDIVLTFFVAYLDSQSYLLIDNPRQIAIRYLSTWFIFDVCSTAPLQSISFLFTNHSSGVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDPKRTWIGAVNPDFKEDSVWNKYVTALYWSITTLTTTGYGDLHAENPREMVFDIFFMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDTVRAATEFAARNQLPHRIQDQMLSHICLKFKTEGLKQQDTLNDLPKAIRASISHYLFYPILQKVYLFHGVSHNFLFQMVSDVEAEYFPPKEDVILQNEAQTDLYILVSGGVDLISSINGQDKVIGQAKAGEMFGEFGVLCQRPQPFTARTTNLSQILRLKRPSFLYTIESNSQDGNIIMNNFFMKTREEERMGFEVMEERASHKILVEEEEEEDDIGNQAYYAKGETTTKPWAIEKQGNYKRRCSFLSERSDENMEGSEEVRMEFEDTFSQNRYGRNGEFVSCLENNVGTSSCSNAGHGNYCCRKRVVVHLQSQCGGKVISQYGKLMLLPDSIEELCKMAGEKLGGHMPTKVMNAENAEIDDINVIRDGDHLFLLHNDIQNVVAKH | 700 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5582232 | 5587651 | - | evm.model.ptg000005l.750 | HCH3g0767 | 541495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0767 | 700 | FunFam | Potassium channel KAT2 | 368 | 504 | - | - | |
HCH3g0767 | 700 | Pfam | KHA, dimerisation domain of potassium ion channel | 619 | 688 | IPR021789 | - | |
HCH3g0767 | 700 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 499 | IPR000595 | - | |
HCH3g0767 | 700 | SUPERFAMILY | cAMP-binding domain-like | 307 | 496 | IPR018490 | - | |
HCH3g0767 | 700 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
HCH3g0767 | 700 | FunFam | Potassium channel KAT3 | 64 | 304 | - | - | |
HCH3g0767 | 700 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 303 | - | - | |
HCH3g0767 | 700 | Pfam | Ion transport protein | 62 | 309 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g0767 | 700 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH3g0767 | 700 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH3g0767 | 700 | PRINTS | EAG/ELK/ERG potassium channel family signature | 276 | 287 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH3g0767 | 700 | PRINTS | EAG/ELK/ERG potassium channel family signature | 294 | 303 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH3g0767 | 700 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH3g0767 | 700 | PRINTS | EAG/ELK/ERG potassium channel family signature | 250 | 267 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH3g0767 | 700 | CDD | CAP_ED | 380 | 493 | IPR000595 | - | |
HCH3g0767 | 700 | Gene3D | Jelly Rolls | 347 | 523 | IPR014710 | - | |
HCH3g0767 | 700 | ProSiteProfiles | KHA domain profile. | 620 | 700 | IPR021789 | - | |
HCH3g0767 | 700 | Pfam | Cyclic nucleotide-binding domain | 399 | 484 | IPR000595 | - | |
HCH3g0767 | 700 | Gene3D | - | 63 | 303 | - | - | |
HCH3g0767 | 700 | PANTHER | POTASSIUM CHANNEL AKT1 | 12 | 525 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0848 | HCH-Chr11:39275228 | HCH3g0767 | HCH-Chr3:5582232 | 3.50E-137 | dispersed | |
HCH12g0326 | HCH-Chr12:1876562 | HCH3g0767 | HCH-Chr3:5582232 | 7.90E-134 | dispersed | |
HCH12g0347 | HCH-Chr12:1988391 | HCH3g0767 | HCH-Chr3:5582232 | 3.80E-09 | dispersed | |
HCH3g0767 | HCH-Chr3:5582232 | HCH8g0800 | HCH-Chr8:44580236 | 1.80E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g0767 | K21867 | - | csv:101215858 | 947.577 |