Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0767 ATGACTTGTTCTTGTGCAAAACACTTCTTCCAGAGATTCTTCACAAATGAATTCCAAATGGATAGTTCTCTTTATCACAACAACACCTTCTTGTCTTCTGATCATCTCTTGCCGTCTCTCGGCGCAAGGATCAACCAAACTACTAAACTTCGAAAACACATCGTTTCGCCTTTCAATCCACTTTATAGAGCCTGGGAGCTTTGGCTGGTTCTTCTGGTCATTTACTCAGCTTGGATCTGTCCTTTCGAGTTTGCATTTCTCCCCTACAAGCAAAATGCGCTGTTTATCGTCGACAACTTTGTCAACGGCTTCTTCGCCATTGATATCGTTCTGACATTCTTCGTGGCTTATCTCGACAGCCAGTCGTATCTTCTCATCGACAACCCCAGACAAATTGCTATCAGGTATTTATCAACCTGGTTTATCTTTGACGTCTGCTCCACTGCACCATTACAATCCATCAGCTTCTTGTTCACAAATCATAGCAGTGGAGTTGGGTTTAAGCTTCTTAACATGCTCAGGCTATGGCGTCTCAGACGGGTCAGCTCCCTCTTTGCAAGGCTGGAGAAAGACATCAGATTCAACTATTTCTGGACAAGATGCACAAAGTTGATTTCTGTTACACTATTTGCAGTTCACTGTGCTGGATGCTTTAACTACGTCATTGCCGATAAGTATCCGGACCCGAAAAGGACATGGATCGGAGCCGTAAACCCGGATTTCAAAGAAGATAGCGTTTGGAACAAATATGTTACTGCGCTTTACTGGTCCATTACGACCTTAACGACCACTGGCTATGGAGATTTGCACGCTGAGAACCCGAGAGAGATGGTGTTTGATATCTTTTTTATGCTCTTCAACTTGGGTTTGACGTCTTATCTCATTGGAAACATGACAAACCTCGTTGTCCATTGGACTAGTCGAACCAGAAATTTTAGGGACACAGTGAGAGCAGCAACAGAATTTGCAGCAAGAAACCAGCTGCCTCATAGGATACAGGATCAAATGTTGTCACATATTTGTCTCAAATTCAAAACTGAAGGATTGAAGCAACAAGATACCTTAAATGATCTTCCAAAAGCCATTAGAGCATCAATATCTCATTATCTCTTCTATCCCATTCTTCAGAAAGTGTACCTCTTCCATGGAGTTTCTCATAACTTTCTTTTCCAAATGGTCTCAGATGTGGAGGCTGAGTATTTCCCACCCAAGGAAGATGTTATTCTGCAGAATGAGGCTCAGACAGATCTTTATATTTTGGTCTCAGGCGGTGTGGATCTGATATCCAGCATCAACGGCCAAGATAAAGTGATTGGACAAGCAAAGGCAGGAGAGATGTTTGGAGAATTTGGAGTTTTATGTCAAAGGCCACAACCTTTCACAGCTAGGACCACCAACCTCTCTCAAATCTTAAGGCTCAAGAGACCTTCCTTCTTGTACACTATTGAATCAAATTCACAAGATGGGAATATTATAATGAACAATTTTTTCATGAAGACGAGGGAAGAAGAAAGAATGGGATTTGAGGTCATGGAAGAAAGAGCAAGTCATAAGATTCTCGTGGAAGAAGAAGAAGAAGAAGACGATATTGGAAATCAAGCATATTATGCCAAAGGAGAAACAACAACAAAACCTTGGGCAATAGAGAAGCAAGGGAATTACAAAAGAAGGTGTAGTTTTCTGTCAGAAAGAAGTGATGAAAATATGGAGGGATCAGAAGAAGTTAGGATGGAGTTTGAAGACACATTCTCTCAAAACAGATATGGAAGAAATGGGGAATTTGTTAGCTGCTTAGAGAATAATGTGGGAACAAGCTCATGCTCAAATGCTGGTCATGGGAATTATTGTTGTAGGAAAAGAGTGGTGGTGCATTTGCAATCTCAATGTGGAGGCAAAGTTATAAGTCAATATGGGAAGTTGATGCTTCTCCCTGATTCCATTGAAGAGCTCTGCAAAATGGCTGGTGAAAAGTTGGGAGGGCATATGCCAACAAAAGTGATGAACGCAGAGAATGCAGAAATTGATGATATAAATGTTATTCGTGATGGTGACCATTTGTTTCTCCTTCATAATGATATCCAAAATGTGGTAGCCAAGCATTGA 2103 41.23 MTCSCAKHFFQRFFTNEFQMDSSLYHNNTFLSSDHLLPSLGARINQTTKLRKHIVSPFNPLYRAWELWLVLLVIYSAWICPFEFAFLPYKQNALFIVDNFVNGFFAIDIVLTFFVAYLDSQSYLLIDNPRQIAIRYLSTWFIFDVCSTAPLQSISFLFTNHSSGVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDPKRTWIGAVNPDFKEDSVWNKYVTALYWSITTLTTTGYGDLHAENPREMVFDIFFMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDTVRAATEFAARNQLPHRIQDQMLSHICLKFKTEGLKQQDTLNDLPKAIRASISHYLFYPILQKVYLFHGVSHNFLFQMVSDVEAEYFPPKEDVILQNEAQTDLYILVSGGVDLISSINGQDKVIGQAKAGEMFGEFGVLCQRPQPFTARTTNLSQILRLKRPSFLYTIESNSQDGNIIMNNFFMKTREEERMGFEVMEERASHKILVEEEEEEDDIGNQAYYAKGETTTKPWAIEKQGNYKRRCSFLSERSDENMEGSEEVRMEFEDTFSQNRYGRNGEFVSCLENNVGTSSCSNAGHGNYCCRKRVVVHLQSQCGGKVISQYGKLMLLPDSIEELCKMAGEKLGGHMPTKVMNAENAEIDDINVIRDGDHLFLLHNDIQNVVAKH 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5582232 5587651 - evm.model.ptg000005l.750 HCH3g0767 541495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0767 700 FunFam Potassium channel KAT2 368 504 - -
HCH3g0767 700 Pfam KHA, dimerisation domain of potassium ion channel 619 688 IPR021789 -
HCH3g0767 700 ProSiteProfiles cAMP/cGMP binding motif profile. 380 499 IPR000595 -
HCH3g0767 700 SUPERFAMILY cAMP-binding domain-like 307 496 IPR018490 -
HCH3g0767 700 SMART cnmp_10 380 497 IPR000595 -
HCH3g0767 700 FunFam Potassium channel KAT3 64 304 - -
HCH3g0767 700 SUPERFAMILY Voltage-gated potassium channels 57 303 - -
HCH3g0767 700 Pfam Ion transport protein 62 309 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0767 700 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH3g0767 700 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH3g0767 700 PRINTS EAG/ELK/ERG potassium channel family signature 276 287 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH3g0767 700 PRINTS EAG/ELK/ERG potassium channel family signature 294 303 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH3g0767 700 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH3g0767 700 PRINTS EAG/ELK/ERG potassium channel family signature 250 267 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH3g0767 700 CDD CAP_ED 380 493 IPR000595 -
HCH3g0767 700 Gene3D Jelly Rolls 347 523 IPR014710 -
HCH3g0767 700 ProSiteProfiles KHA domain profile. 620 700 IPR021789 -
HCH3g0767 700 Pfam Cyclic nucleotide-binding domain 399 484 IPR000595 -
HCH3g0767 700 Gene3D - 63 303 - -
HCH3g0767 700 PANTHER POTASSIUM CHANNEL AKT1 12 525 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0848 HCH-Chr11:39275228 HCH3g0767 HCH-Chr3:5582232 3.50E-137 dispersed
HCH12g0326 HCH-Chr12:1876562 HCH3g0767 HCH-Chr3:5582232 7.90E-134 dispersed
HCH12g0347 HCH-Chr12:1988391 HCH3g0767 HCH-Chr3:5582232 3.80E-09 dispersed
HCH3g0767 HCH-Chr3:5582232 HCH8g0800 HCH-Chr8:44580236 1.80E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0767 K21867 - csv:101215858 947.577