Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0789 ATGAGAAAAACTTCTTCCAAATCCTTTTCTTCAGGAGGTCCATGGTACGGACCCGACCGTGTCAAGTTCTTAGGCCCATTCTCTGGCGAAGCACCATCTTACCTTACTGGAGAGTTCCCCGGTGACTACGGTTGGGACACCGCCGGGCTTTCGGCCGACCCCGAGACCTTTGCTAAGAACCGTGAGCTTGAAGTCATCCATTCCAGATGGGCAATGCTCGGAGCTCTTGGTTGTGTCTTTCCAGAGCTTCTCTCCCTCAACGGCTTGAAGTTCGGCGAAGCAGTATGGTTCAAGGCCGGATCTCAGATCTTCAGCGAAGGCGGTCTTGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATTCTGGCCATTTGGGCAACTCAAGTAGTATTGATGGGAGCTGTGGAGGGATACCGTATTGCCGGTGGACCGCTGGGAGAGGTGACCGACCCGATATACCCGGGTGGAAGCTTTGATCCATTGGGACTGGCAGATGATCCAGAAGCTTTTGCAGAGCTGAAGGTGAAGGAGTTAAAAAATGGAAGGCTCGCAATGTTCTCCATGTTTGGATTCTTTGTGCAAGCTATTGTGACAGGAAAAGGACCATTGGAGAATCTAGCAGATCATCTTGCTGATCCAGTGAACAACAATGCTTGGGCATATGCCACCAACTTTGTTCCTGGAAAATGA 696 50.86 MRKTSSKSFSSGGPWYGPDRVKFLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSLNGLKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5775660 5776355 + evm.model.ptg000005l.728 HCH3g0789 541517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0789 231 Gene3D Chlorophyll a/b binding protein domain 22 224 - -
HCH3g0789 231 Pfam Chlorophyll A-B binding protein 31 198 IPR022796 -
HCH3g0789 231 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 231 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH3g0789 231 SUPERFAMILY Chlorophyll a-b binding protein 14 228 - -
HCH3g0789 231 FunFam Chlorophyll a-b binding protein, chloroplastic 22 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0789 HCH-Chr3:5775660 HCH6g0408 HCH-Chr6:8274928 6.60E-131 dispersed
HCH3g0788 HCH-Chr3:5772285 HCH3g0789 HCH-Chr3:5775660 6.20E-133 tandem
HCH3g0789 HCH-Chr3:5775660 HCH3g0790 HCH-Chr3:5790920 1.60E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0789 K08912 - gmx:100800351 464.536