Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0790 ATGGCTGCCTCTACTATGGCTCTCTCCTCTCCTTCACTTTCTGGAAAGGCAATCAAACTCTCCCCCTCTTCCCCTGACCTTCTTGGCAATGGAAGAGTCTCCATGAGAAAAACTTCCACCAAATCTGTATCTTCTGGAAGTTCATGGTACGGCCCCGACCGTGTCAAGTACTTAGGCCCATTCTCTGGCGAGGCACCATCCTACCTTACTGGAGAGTTCCCCGGTGATTATGGTTGGGACACCGCCGGGCTTTCCGCCGACCCCGAGACCTTTGCTAAGAACCGTGAGCTCGAAGTCATCCATTCCAGATGGGCTATGCTCGGAGCTCTTGGTTGTGTCTTTCCAGAGCTTCTCTCCCGCAATGGCGTGAAGTTTGGAGAAGCAGTATGGTTCAAGGCCGGATCTCAGATCTTCAGTGAAGGCGGTCTTGACTACTTGGGAAACCCTAGCTTGGTTCATGCACAGAGCATTCTGGCCATTTGGGCAACTCAAGTAGTATTGATGGGAGCTGTTGAGGGATACCGTATTGCCGGTGGACCGCTCGGAGAGGTGACCGACCCGATCTATCCGGGTGGAAGCTTTGACCCATTGGGACTTGCAGATGATCCAGAAGCTTTTGCAGAGCTTAAGGTGAAGGAGTTGAAAAATGGAAGGCTCGCAATGTTCTCCATGTTTGGATTCTTTGTGCAAGCTATTGTGACAGGAAAAGGACCATTGGAGAATCTAGCAGATCATCTTGCTGATCCAGTGAACAACAATGCTTGGGCATATGCCACCAACTTTGTTCCTGGAAAATGA 798 50.63 MAASTMALSSPSLSGKAIKLSPSSPDLLGNGRVSMRKTSTKSVSSGSSWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5790920 5791717 + evm.model.ptg000005l.727 HCH3g0790 541518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0790 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
HCH3g0790 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
HCH3g0790 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
HCH3g0790 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
HCH3g0790 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH3g0790 265 MobiDBLite consensus disorder prediction 24 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1114 HCH-Chr12:8672768 HCH3g0790 HCH-Chr3:5790920 3.00E-98 dispersed
HCH12g1628 HCH-Chr12:43203493 HCH3g0790 HCH-Chr3:5790920 1.70E-50 dispersed
HCH3g0787 HCH-Chr3:5745040 HCH3g0790 HCH-Chr3:5790920 1.80E-148 dispersed
HCH3g0788 HCH-Chr3:5772285 HCH3g0790 HCH-Chr3:5790920 6.60E-151 dispersed
HCH3g0790 HCH-Chr3:5790920 HCH6g0408 HCH-Chr6:8274928 2.70E-136 dispersed
HCH3g0789 HCH-Chr3:5775660 HCH3g0790 HCH-Chr3:5790920 1.60E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0790 K08912 - rcu:8289767 509.605